Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
NUP88Q99567 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
NUP88Q99567 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
NUP88Q99567 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
NUP88Q99567 AC008079.2-201ENST00000623543 20396 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
NUP88Q99567 RNU6-304P-201ENST00000364855 107 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC5.81□□□□□ -1.48
NUP88Q99567 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
NUP88Q99567 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
NUP88Q99567 FCF1P5-201ENST00000406490 482 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.81□□□□□ -1.48
NUP88Q99567 VPS26BP1-201ENST00000417155 755 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 AL356320.2-201ENST00000417263 507 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.81□□□□□ -1.48
NUP88Q99567 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC5.81□□□□□ -1.48
NUP88Q99567 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC5.81□□□□□ -1.48
NUP88Q99567 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.81□□□□□ -1.48
NUP88Q99567 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC5.81□□□□□ -1.48
NUP88Q99567 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC5.81□□□□□ -1.48
NUP88Q99567 RPS29P9-201ENST00000440360 171 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.81□□□□□ -1.48
NUP88Q99567 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC5.81□□□□□ -1.48
NUP88Q99567 H2AFZP6-201ENST00000444403 394 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 YWHAQP9-201ENST00000445891 512 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 AC004022.1-201ENST00000447766 1066 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 AC091180.1-201ENST00000462104 372 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 RPS29P22-201ENST00000472363 168 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
NUP88Q99567 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
NUP88Q99567 NIFKP7-201ENST00000503365 834 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.81□□□□□ -1.48
NUP88Q99567 AC091951.3-201ENST00000504093 246 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
NUP88Q99567 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC5.81□□□□□ -1.48
NUP88Q99567 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
NUP88Q99567 AC113347.3-201ENST00000509113 148 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
NUP88Q99567 RNA5SP392-201ENST00000516905 112 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC5.81□□□□□ -1.48
NUP88Q99567 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC5.81□□□□□ -1.48
NUP88Q99567 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.81□□□□□ -1.48
NUP88Q99567 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC5.81□□□□□ -1.48
NUP88Q99567 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC5.81□□□□□ -1.48
NUP88Q99567 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.81□□□□□ -1.48
NUP88Q99567 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC5.81□□□□□ -1.48
NUP88Q99567 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
NUP88Q99567 AC006349.1-201ENST00000555526 235 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.81□□□□□ -1.48
NUP88Q99567 AC068714.1-201ENST00000559623 800 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.81□□□□□ -1.48
NUP88Q99567 BGLT3-201ENST00000564523 994 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 VN1R78P-201ENST00000597393 564 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 AC011453.2-201ENST00000603737 729 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.81□□□□□ -1.48
NUP88Q99567 AC108359.1-201ENST00000616451 1211 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 AC087821.2-201ENST00000637086 450 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
NUP88Q99567 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
NUP88Q99567 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 AC012618.3-205ENST00000637896 1496 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
NUP88Q99567 AC046144.1-201ENST00000478559 1853 ntBASIC5.81□□□□□ -1.48
NUP88Q99567 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
NUP88Q99567 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
NUP88Q99567 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
NUP88Q99567 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
NUP88Q99567 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
NUP88Q99567 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
NUP88Q99567 AC099654.2-201ENST00000433031 1980 ntBASIC5.8□□□□□ -1.48
NUP88Q99567 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
NUP88Q99567 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
NUP88Q99567 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
NUP88Q99567 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
NUP88Q99567 RNU6-413P-201ENST00000384115 107 ntBASIC5.8□□□□□ -1.48
NUP88Q99567 Z97832.1-201ENST00000402490 328 ntBASIC5.8□□□□□ -1.48
NUP88Q99567 AL079342.2-201ENST00000403367 482 ntBASIC5.8□□□□□ -1.48
NUP88Q99567 IGKV1OR9-1-201ENST00000424370 284 ntBASIC5.8□□□□□ -1.48
NUP88Q99567 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC5.8□□□□□ -1.48
NUP88Q99567 CEACAMP9-201ENST00000442990 513 ntBASIC5.8□□□□□ -1.48
NUP88Q99567 RPL36AP15-201ENST00000444514 266 ntBASIC5.8□□□□□ -1.48
NUP88Q99567 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.8□□□□□ -1.48
NUP88Q99567 AC010733.1-201ENST00000451515 401 ntBASIC5.8□□□□□ -1.48
NUP88Q99567 AC243772.1-201ENST00000451620 410 ntBASIC5.8□□□□□ -1.48
NUP88Q99567 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC5.8□□□□□ -1.48
NUP88Q99567 USP9YP25-201ENST00000457708 443 ntBASIC5.8□□□□□ -1.48
NUP88Q99567 RPL23AP71-201ENST00000470966 469 ntBASIC5.8□□□□□ -1.48
NUP88Q99567 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC5.8□□□□□ -1.48
NUP88Q99567 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC5.8□□□□□ -1.48
NUP88Q99567 snoU109.6-201ENST00000516831 118 ntBASIC5.8□□□□□ -1.48
NUP88Q99567 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.8□□□□□ -1.48
NUP88Q99567 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.8□□□□□ -1.48
NUP88Q99567 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC5.8□□□□□ -1.48
NUP88Q99567 AC079075.1-201ENST00000559543 878 ntBASIC5.8□□□□□ -1.48
NUP88Q99567 UBE2FP2-201ENST00000566646 462 ntBASIC5.8□□□□□ -1.48
NUP88Q99567 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.8□□□□□ -1.48
NUP88Q99567 MIR4330-201ENST00000579077 105 ntBASIC5.8□□□□□ -1.48
NUP88Q99567 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC5.8□□□□□ -1.48
NUP88Q99567 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC5.8□□□□□ -1.48
NUP88Q99567 PCNAP1-202ENST00000595299 752 ntBASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms