Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.71□□□□□ -1.5
SMARCA1P28370 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SMARCA1P28370 RNU6-1214P-201ENST00000363650 109 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC5.71□□□□□ -1.5
SMARCA1P28370 RNU6-549P-201ENST00000384433 107 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 CASP3-203ENST00000393588 677 ntTSL 4 BASIC5.71□□□□□ -1.5
SMARCA1P28370 SETP15-201ENST00000412724 337 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 COX6B1P1-201ENST00000415962 213 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 AL365338.1-201ENST00000422282 858 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC5.71□□□□□ -1.5
SMARCA1P28370 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.71□□□□□ -1.5
SMARCA1P28370 TXNL1P1-201ENST00000429528 554 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC5.71□□□□□ -1.5
SMARCA1P28370 RPL12P3-201ENST00000440080 396 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.71□□□□□ -1.5
SMARCA1P28370 AC112498.1-201ENST00000444401 332 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 PTENP1-201ENST00000447117 1215 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC5.71□□□□□ -1.5
SMARCA1P28370 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC5.71□□□□□ -1.5
SMARCA1P28370 SBDSP1-204ENST00000453858 737 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC5.71□□□□□ -1.5
SMARCA1P28370 RPL23AP56-201ENST00000460778 453 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 RPL21P6-201ENST00000479171 504 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.71□□□□□ -1.5
SMARCA1P28370 IGKV2D-10-201ENST00000520194 281 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 AC083923.1-201ENST00000523708 376 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 MTCO3P15-201ENST00000526563 574 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 AC021006.3-201ENST00000530771 192 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.71□□□□□ -1.5
SMARCA1P28370 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.71□□□□□ -1.5
SMARCA1P28370 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC5.71□□□□□ -1.5
SMARCA1P28370 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC5.71□□□□□ -1.5
SMARCA1P28370 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC5.71□□□□□ -1.5
SMARCA1P28370 MTND4LP24-201ENST00000572277 291 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC5.71□□□□□ -1.5
SMARCA1P28370 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.5
SMARCA1P28370 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SMARCA1P28370 AC124856.1-201ENST00000600819 896 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 AC090525.3-201ENST00000605601 189 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 AC010424.2-201ENST00000607594 443 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC5.71□□□□□ -1.5
SMARCA1P28370 AL158163.2-201ENST00000619110 700 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC5.71□□□□□ -1.5
SMARCA1P28370 U6.107-201ENST00000637108 79 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 SEC63P2-201ENST00000503863 1939 ntBASIC5.71□□□□□ -1.5
SMARCA1P28370 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
SMARCA1P28370 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.71□□□□□ -1.5
SMARCA1P28370 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.71□□□□□ -1.5
SMARCA1P28370 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SMARCA1P28370 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SMARCA1P28370 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.71□□□□□ -1.5
SMARCA1P28370 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
SMARCA1P28370 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SMARCA1P28370 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SMARCA1P28370 AC099654.2-201ENST00000433031 1980 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SMARCA1P28370 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.7□□□□□ -1.5
SMARCA1P28370 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SMARCA1P28370 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
SMARCA1P28370 AL035419.1-201ENST00000397037 564 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 AP000357.1-201ENST00000409926 1165 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC5.7□□□□□ -1.5
SMARCA1P28370 AL008987.1-201ENST00000415528 237 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC5.7□□□□□ -1.5
SMARCA1P28370 AC027644.1-201ENST00000419595 298 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 RAC1P8-201ENST00000427086 527 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.7□□□□□ -1.5
SMARCA1P28370 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC5.7□□□□□ -1.5
SMARCA1P28370 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC5.7□□□□□ -1.5
SMARCA1P28370 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC5.7□□□□□ -1.5
SMARCA1P28370 AC093414.1-201ENST00000434712 514 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 AC073648.4-201ENST00000442655 781 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 FHP1-201ENST00000442741 703 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC5.7□□□□□ -1.5
SMARCA1P28370 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC5.7□□□□□ -1.5
SMARCA1P28370 AC000111.2-201ENST00000448200 210 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC5.7□□□□□ -1.5
SMARCA1P28370 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC5.7□□□□□ -1.5
SMARCA1P28370 SLC25A18P1-201ENST00000449385 454 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 Z99714.1-201ENST00000450463 807 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC5.7□□□□□ -1.5
SMARCA1P28370 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC5.7□□□□□ -1.5
SMARCA1P28370 AC010486.2-201ENST00000505572 483 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 AC008565.1-201ENST00000509046 885 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 BTF3P13-201ENST00000513224 490 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 HMGB1P1-201ENST00000522557 636 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SMARCA1P28370 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC5.7□□□□□ -1.5
SMARCA1P28370 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.7□□□□□ -1.5
SMARCA1P28370 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC5.7□□□□□ -1.5
SMARCA1P28370 NPM1P47-201ENST00000560843 856 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 MTCO1P40-201ENST00000574371 625 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC5.7□□□□□ -1.5
SMARCA1P28370 AC020910.3-201ENST00000603701 874 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC5.7□□□□□ -1.5
SMARCA1P28370 AL392112.1-201ENST00000605115 829 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 AL445423.1-201ENST00000609941 536 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 AC007497.1-201ENST00000610421 561 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 AC024257.5-201ENST00000612739 531 ntBASIC5.7□□□□□ -1.5
SMARCA1P28370 VN1R7P-201ENST00000619242 903 ntBASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms