Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC4.1□□□□□ -1.75
SDC1P18827 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.1□□□□□ -1.75
SDC1P18827 AL049844.2-201ENST00000604280 628 ntBASIC4.1□□□□□ -1.75
SDC1P18827 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.1□□□□□ -1.75
SDC1P18827 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC4.1□□□□□ -1.75
SDC1P18827 AC138907.10-201ENST00000623708 983 ntBASIC4.1□□□□□ -1.75
SDC1P18827 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SDC1P18827 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.1□□□□□ -1.75
SDC1P18827 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
SDC1P18827 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
SDC1P18827 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.1□□□□□ -1.75
SDC1P18827 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SDC1P18827 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SDC1P18827 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
SDC1P18827 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
SDC1P18827 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.09□□□□□ -1.75
SDC1P18827 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
SDC1P18827 AC079741.1-201ENST00000321498 212 ntBASIC4.09□□□□□ -1.75
SDC1P18827 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SDC1P18827 MIR513A2-201ENST00000385249 127 ntBASIC4.09□□□□□ -1.75
SDC1P18827 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SDC1P18827 RPL23AP59-201ENST00000399415 461 ntBASIC4.09□□□□□ -1.75
SDC1P18827 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.09□□□□□ -1.75
SDC1P18827 AL132765.1-201ENST00000434165 553 ntBASIC4.09□□□□□ -1.75
SDC1P18827 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.09□□□□□ -1.75
SDC1P18827 AC243772.1-201ENST00000451620 410 ntBASIC4.09□□□□□ -1.75
SDC1P18827 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.09□□□□□ -1.75
SDC1P18827 AC025768.1-201ENST00000510057 267 ntBASIC4.09□□□□□ -1.75
SDC1P18827 PARP4P3-201ENST00000510265 317 ntBASIC4.09□□□□□ -1.75
SDC1P18827 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.09□□□□□ -1.75
SDC1P18827 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC4.09□□□□□ -1.75
SDC1P18827 RNA5SP154-201ENST00000516193 111 ntBASIC4.09□□□□□ -1.75
SDC1P18827 RNU6-1004P-201ENST00000516584 111 ntBASIC4.09□□□□□ -1.75
SDC1P18827 AF186190.1-201ENST00000517470 480 ntBASIC4.09□□□□□ -1.75
SDC1P18827 MYL12AP1-201ENST00000518490 515 ntBASIC4.09□□□□□ -1.75
SDC1P18827 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.09□□□□□ -1.75
SDC1P18827 OR5M7P-201ENST00000526140 972 ntBASIC4.09□□□□□ -1.75
SDC1P18827 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC4.09□□□□□ -1.75
SDC1P18827 AC008083.2-201ENST00000546707 476 ntBASIC4.09□□□□□ -1.75
SDC1P18827 AC093014.1-201ENST00000548926 724 ntBASIC4.09□□□□□ -1.75
SDC1P18827 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC4.09□□□□□ -1.75
SDC1P18827 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC4.09□□□□□ -1.75
SDC1P18827 AC233266.2-201ENST00000567067 528 ntBASIC4.09□□□□□ -1.75
SDC1P18827 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.09□□□□□ -1.75
SDC1P18827 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.09□□□□□ -1.75
SDC1P18827 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.09□□□□□ -1.75
SDC1P18827 AL671309.1-201ENST00000603750 544 ntBASIC4.09□□□□□ -1.75
SDC1P18827 AC024940.4-201ENST00000605507 246 ntBASIC4.09□□□□□ -1.75
SDC1P18827 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC4.09□□□□□ -1.75
SDC1P18827 AL391834.1-201ENST00000609609 560 ntBASIC4.09□□□□□ -1.75
SDC1P18827 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.09□□□□□ -1.75
SDC1P18827 uc_338.13-201ENST00000618243 179 ntBASIC4.09□□□□□ -1.75
SDC1P18827 AL645927.2-201ENST00000618350 349 ntBASIC4.09□□□□□ -1.75
SDC1P18827 MIR7703-201ENST00000620784 77 ntBASIC4.09□□□□□ -1.75
SDC1P18827 AC090617.9-201ENST00000623751 147 ntBASIC4.09□□□□□ -1.75
SDC1P18827 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC4.09□□□□□ -1.75
SDC1P18827 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC4.09□□□□□ -1.75
SDC1P18827 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SDC1P18827 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.09□□□□□ -1.75
SDC1P18827 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
SDC1P18827 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.09□□□□□ -1.75
SDC1P18827 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.76
SDC1P18827 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.09□□□□□ -1.76
SDC1P18827 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
SDC1P18827 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
SDC1P18827 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.08□□□□□ -1.76
SDC1P18827 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
SDC1P18827 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SDC1P18827 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SDC1P18827 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.08□□□□□ -1.76
SDC1P18827 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.08□□□□□ -1.76
SDC1P18827 RNU6-225P-201ENST00000384613 103 ntBASIC4.08□□□□□ -1.76
SDC1P18827 MIR129-1-201ENST00000384972 72 ntBASIC4.08□□□□□ -1.76
SDC1P18827 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SDC1P18827 CCT8P1-201ENST00000413611 1657 ntBASIC4.08□□□□□ -1.76
SDC1P18827 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC4.08□□□□□ -1.76
SDC1P18827 AC069213.2-201ENST00000420238 366 ntBASIC4.08□□□□□ -1.76
SDC1P18827 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.08□□□□□ -1.76
SDC1P18827 EIF1P3-201ENST00000423841 334 ntBASIC4.08□□□□□ -1.76
SDC1P18827 AC023141.6-201ENST00000429418 337 ntBASIC4.08□□□□□ -1.76
SDC1P18827 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC4.08□□□□□ -1.76
SDC1P18827 CEACAMP1-201ENST00000434624 1035 ntBASIC4.08□□□□□ -1.76
SDC1P18827 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC4.08□□□□□ -1.76
SDC1P18827 TRAPPC13P1-201ENST00000435991 1062 ntBASIC4.08□□□□□ -1.76
SDC1P18827 AC006466.1-201ENST00000438721 289 ntBASIC4.08□□□□□ -1.76
SDC1P18827 RPL23AP52-201ENST00000439311 478 ntBASIC4.08□□□□□ -1.76
SDC1P18827 AC006326.1-201ENST00000445465 787 ntBASIC4.08□□□□□ -1.76
SDC1P18827 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC4.08□□□□□ -1.76
SDC1P18827 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SDC1P18827 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC4.08□□□□□ -1.76
SDC1P18827 AC025459.1-201ENST00000504072 156 ntBASIC4.08□□□□□ -1.76
SDC1P18827 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC4.08□□□□□ -1.76
SDC1P18827 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.08□□□□□ -1.76
SDC1P18827 OR8G5-201ENST00000524943 1041 ntBASIC4.08□□□□□ -1.76
SDC1P18827 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC4.08□□□□□ -1.76
SDC1P18827 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC4.08□□□□□ -1.76
SDC1P18827 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC4.08□□□□□ -1.76
SDC1P18827 AL049870.4-201ENST00000555741 486 ntBASIC4.08□□□□□ -1.76
SDC1P18827 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.08□□□□□ -1.76
SDC1P18827 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms