Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC6□□□□□ -1.45
COL6A1P12109 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC6□□□□□ -1.45
COL6A1P12109 ALB-219ENST00000621085 1418 ntTSL 5 BASIC6□□□□□ -1.45
COL6A1P12109 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL6A1P12109 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
COL6A1P12109 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC6□□□□□ -1.45
COL6A1P12109 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC6□□□□□ -1.45
COL6A1P12109 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL6A1P12109 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL6A1P12109 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC6□□□□□ -1.45
COL6A1P12109 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
COL6A1P12109 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL6A1P12109 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL6A1P12109 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC6□□□□□ -1.45
COL6A1P12109 FAM3C2-201ENST00000312214 681 ntBASIC6□□□□□ -1.45
COL6A1P12109 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC6□□□□□ -1.45
COL6A1P12109 SNORD65C-201ENST00000390962 71 ntBASIC6□□□□□ -1.45
COL6A1P12109 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL6A1P12109 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC6□□□□□ -1.45
COL6A1P12109 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC6□□□□□ -1.45
COL6A1P12109 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC6□□□□□ -1.45
COL6A1P12109 RPL30P16-201ENST00000419341 429 ntBASIC6□□□□□ -1.45
COL6A1P12109 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC6□□□□□ -1.45
COL6A1P12109 OR2AM1P-201ENST00000422137 422 ntBASIC6□□□□□ -1.45
COL6A1P12109 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC6□□□□□ -1.45
COL6A1P12109 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC6□□□□□ -1.45
COL6A1P12109 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC6□□□□□ -1.45
COL6A1P12109 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC6□□□□□ -1.45
COL6A1P12109 TPT1P12-201ENST00000448968 492 ntBASIC6□□□□□ -1.45
COL6A1P12109 AL513533.1-201ENST00000453728 415 ntBASIC6□□□□□ -1.45
COL6A1P12109 HMGB1P4-201ENST00000455362 567 ntBASIC6□□□□□ -1.45
COL6A1P12109 AC093899.1-201ENST00000457984 376 ntBASIC6□□□□□ -1.45
COL6A1P12109 PPIAP21-201ENST00000464473 501 ntBASIC6□□□□□ -1.45
COL6A1P12109 SLC25A51P1-201ENST00000468432 871 ntBASIC6□□□□□ -1.45
COL6A1P12109 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC6□□□□□ -1.45
COL6A1P12109 AC097484.1-201ENST00000471148 389 ntBASIC6□□□□□ -1.45
COL6A1P12109 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC6□□□□□ -1.45
COL6A1P12109 Y_RNA.695-201ENST00000516715 107 ntBASIC6□□□□□ -1.45
COL6A1P12109 MTCO3P15-201ENST00000526563 574 ntBASIC6□□□□□ -1.45
COL6A1P12109 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC6□□□□□ -1.45
COL6A1P12109 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC6□□□□□ -1.45
COL6A1P12109 CLPTM1LP1-201ENST00000604519 484 ntBASIC6□□□□□ -1.45
COL6A1P12109 AC004223.4-201ENST00000612426 332 ntBASIC6□□□□□ -1.45
COL6A1P12109 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC6□□□□□ -1.45
COL6A1P12109 AC105227.2-201ENST00000615075 605 ntBASIC6□□□□□ -1.45
COL6A1P12109 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL6A1P12109 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC6□□□□□ -1.45
COL6A1P12109 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC6□□□□□ -1.45
COL6A1P12109 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
COL6A1P12109 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
COL6A1P12109 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
COL6A1P12109 AC090017.1-201ENST00000548612 1779 ntBASIC6□□□□□ -1.45
COL6A1P12109 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC6□□□□□ -1.45
COL6A1P12109 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC6□□□□□ -1.45
COL6A1P12109 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC6□□□□□ -1.45
COL6A1P12109 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC6□□□□□ -1.45
COL6A1P12109 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL6A1P12109 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL6A1P12109 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
COL6A1P12109 POMP-202ENST00000460403 1428 ntTSL 3 BASIC5.99□□□□□ -1.45
COL6A1P12109 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A1P12109 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A1P12109 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A1P12109 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A1P12109 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
COL6A1P12109 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
COL6A1P12109 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A1P12109 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A1P12109 AL450326.2-201ENST00000421913 1962 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A1P12109 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A1P12109 RNU1-136P-201ENST00000384181 164 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 SNORA40.2-201ENST00000390847 128 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 FCF1P9-201ENST00000412546 282 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC5.99□□□□□ -1.45
COL6A1P12109 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC5.99□□□□□ -1.45
COL6A1P12109 RPL7P56-201ENST00000429441 717 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC5.99□□□□□ -1.45
COL6A1P12109 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC5.99□□□□□ -1.45
COL6A1P12109 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.99□□□□□ -1.45
COL6A1P12109 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC5.99□□□□□ -1.45
COL6A1P12109 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.99□□□□□ -1.45
COL6A1P12109 ATP5A1P7-201ENST00000453978 1279 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 AC068724.1-201ENST00000487100 792 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 SNORA70.11-201ENST00000515987 138 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 SNORA70.13-201ENST00000516116 138 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 SNORA31.13-201ENST00000516624 135 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.99□□□□□ -1.45
COL6A1P12109 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC5.99□□□□□ -1.45
COL6A1P12109 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC5.99□□□□□ -1.45
COL6A1P12109 OR5AN2P-201ENST00000534535 896 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC5.99□□□□□ -1.45
COL6A1P12109 MIR4737-201ENST00000583979 81 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 MIR3611-201ENST00000584484 83 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC5.99□□□□□ -1.45
COL6A1P12109 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC5.99□□□□□ -1.45
COL6A1P12109 AC073544.2-201ENST00000601155 540 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 PSMA6P4-201ENST00000603247 718 ntBASIC5.99□□□□□ -1.45
COL6A1P12109 AC104687.2-201ENST00000604442 342 ntBASIC5.99□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms