Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC090751.1-201ENST00000566966 267 ntBASIC5.45□□□□□ -1.54
TDP1Q9NUW8 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC5.45□□□□□ -1.54
TDP1Q9NUW8 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC5.45□□□□□ -1.54
TDP1Q9NUW8 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC5.45□□□□□ -1.54
TDP1Q9NUW8 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.45□□□□□ -1.54
TDP1Q9NUW8 DUXAP11-201ENST00000603858 526 ntBASIC5.45□□□□□ -1.54
TDP1Q9NUW8 AC010738.1-201ENST00000604970 987 ntBASIC5.45□□□□□ -1.54
TDP1Q9NUW8 AC135507.1-201ENST00000607214 561 ntBASIC5.45□□□□□ -1.54
TDP1Q9NUW8 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC5.45□□□□□ -1.54
TDP1Q9NUW8 AC131235.4-201ENST00000609288 620 ntBASIC5.45□□□□□ -1.54
TDP1Q9NUW8 AC093799.2-201ENST00000610062 578 ntBASIC5.45□□□□□ -1.54
TDP1Q9NUW8 EIF3FP1-201ENST00000613970 806 ntBASIC5.45□□□□□ -1.54
TDP1Q9NUW8 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC5.45□□□□□ -1.54
TDP1Q9NUW8 AC091931.1-201ENST00000623488 728 ntBASIC5.45□□□□□ -1.54
TDP1Q9NUW8 AC116618.1-201ENST00000634617 774 ntBASIC5.45□□□□□ -1.54
TDP1Q9NUW8 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
TDP1Q9NUW8 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC5.45□□□□□ -1.54
TDP1Q9NUW8 AC109315.1-201ENST00000584143 1347 ntBASIC5.45□□□□□ -1.54
TDP1Q9NUW8 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
TDP1Q9NUW8 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
TDP1Q9NUW8 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC083899.1-201ENST00000454465 3819 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AL355834.1-201ENST00000556602 3965 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 RN7SKP149-201ENST00000363008 344 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 OR8V1P-201ENST00000395193 873 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 PPIAP9-201ENST00000403866 498 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 MIR1182-201ENST00000408363 97 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 EI24P4-201ENST00000423683 1078 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 MTCO3P5-201ENST00000433620 714 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC006466.1-201ENST00000438721 289 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 CBX1P4-201ENST00000439415 457 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 RPL23AP12-201ENST00000467573 473 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 MTND4LP3-201ENST00000468320 276 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC109445.1-201ENST00000512356 383 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 OR5AZ1P-201ENST00000527448 943 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 UBE2NP1-201ENST00000545592 458 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 PCNPP1-201ENST00000552501 511 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 ISCA1P3-201ENST00000577104 373 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 VN1R90P-201ENST00000595717 726 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC006539.2-201ENST00000601729 572 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC025165.5-201ENST00000602802 578 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC100827.5-201ENST00000615883 426 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC018926.3-201ENST00000618841 406 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC098679.4-201ENST00000624241 654 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC005539.1-201ENST00000443768 1479 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC006206.1-201ENST00000544842 3387 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 AC100757.1-201ENST00000616872 1835 ntBASIC5.44□□□□□ -1.54
TDP1Q9NUW8 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
TDP1Q9NUW8 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms