Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 NDUFB5P1-201ENST00000508134 564 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 COX6B1P5-201ENST00000509843 249 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 RNU6-276P-201ENST00000516114 96 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 snoU109.6-201ENST00000516831 118 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 OR7E128P-201ENST00000532736 1024 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 NMNAT1P1-201ENST00000554095 876 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
NKX3-1Q99801 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 RNF138P2-201ENST00000603490 592 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 AC119501.1-201ENST00000603646 475 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 MEMO1P5-201ENST00000604810 406 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 AC096553.1-201ENST00000605169 829 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 Mico1.1-201ENST00000611698 204 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 AL121890.3-201ENST00000618494 516 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 AC005086.4-201ENST00000623065 213 ntBASIC4.15□□□□□ -1.75
NKX3-1Q99801 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
NKX3-1Q99801 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
NKX3-1Q99801 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.15□□□□□ -1.75
NKX3-1Q99801 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.75
NKX3-1Q99801 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
NKX3-1Q99801 RNF6P1-201ENST00000444889 1784 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 DDX18P3-201ENST00000404856 2007 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
NKX3-1Q99801 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
NKX3-1Q99801 MAPK10-263ENST00000641052 4307 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.14□□□□□ -1.75
NKX3-1Q99801 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
NKX3-1Q99801 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
NKX3-1Q99801 RNA5SP428-201ENST00000365129 132 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 RNU6-932P-201ENST00000391108 106 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 AP000580.1-201ENST00000404439 358 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC106883.1-201ENST00000418805 562 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC048351.1-201ENST00000420064 602 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 MTCYBP32-201ENST00000427945 1084 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC114973.1-201ENST00000429057 632 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 YWHAEP5-201ENST00000431545 765 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 NMNAT1P2-201ENST00000435192 860 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 TMX2P1-201ENST00000436507 708 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 AL450263.2-201ENST00000439400 589 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 RRM2P4-201ENST00000441721 562 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 Z80107.2-201ENST00000445127 392 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 EXOSC3P1-201ENST00000448649 500 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 OTX2P1-201ENST00000450956 354 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC010733.1-201ENST00000451515 401 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 EIF4A2P4-201ENST00000458691 1196 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 WDR78-207ENST00000488333 613 ntTSL 3 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC096571.1-202ENST00000506634 735 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC091163.3-201ENST00000518269 1144 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC010376.1-201ENST00000522101 334 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC083923.1-201ENST00000523708 376 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC087783.2-201ENST00000605070 562 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC024940.4-201ENST00000605507 246 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC091046.2-201ENST00000620775 665 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 AC138907.10-201ENST00000623708 983 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 LINC01808-202ENST00000641680 1116 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 LINC01739-205ENST00000641890 573 ntBASIC4.14□□□□□ -1.75
NKX3-1Q99801 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.14□□□□□ -1.75
NKX3-1Q99801 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
NKX3-1Q99801 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 127 ms