Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC106871.1-201ENST00000568324 3102 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 ANAPC1P1-201ENST00000426186 2145 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC005261.4-201ENST00000600047 1385 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 TCEA1P4-201ENST00000415066 844 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 RPL7P28-201ENST00000437739 740 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 MEG8-217ENST00000556637 924 ntTSL 5 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 SNORA51-201ENST00000606420 132 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AL353746.1-201ENST00000566293 6881 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 MIR183-201ENST00000384958 110 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 GNG5P5-201ENST00000420444 220 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 AL160290.3-201ENST00000604869 165 ntBASIC1.29□□□□□ -2.2
SYNE1Q8NF91 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC1.29□□□□□ -2.2
SYNE1Q8NF91 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC007068.1-201ENST00000396690 844 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AL356968.2-201ENST00000412769 1257 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 CEACAMP1-201ENST00000434624 1035 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC104306.1-201ENST00000449702 371 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 LSM1P2-201ENST00000604911 322 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AL445363.3-201ENST00000623080 671 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AP003400.2-201ENST00000624036 666 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 ARHGAP42P3-201ENST00000443989 2508 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AL358472.1-201ENST00000431295 329 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC092691.2-201ENST00000461787 803 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 KCTD9P2-201ENST00000512203 1013 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 MIR3945-201ENST00000581853 98 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AL031119.1-201ENST00000404707 1879 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 Y_RNA.500-201ENST00000384466 111 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 OR9M1P-201ENST00000459641 921 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 RNA5SP73-201ENST00000516744 108 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 Y_RNA.719-201ENST00000517156 106 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC130352.1-201ENST00000602979 661 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC005972.3-201ENST00000606304 481 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 TMEM30CP-203ENST00000637814 1035 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 CASC19-206ENST00000641028 1430 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 PROS2P-201ENST00000474651 1951 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 SNORA71.2-201ENST00000364941 134 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 RPS20P14-201ENST00000412545 360 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 RPL6P29-201ENST00000414863 865 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC004938.1-201ENST00000438468 308 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 HSFY6P-201ENST00000445573 403 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 RPL21P6-201ENST00000479171 504 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC006349.1-201ENST00000555526 235 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 AC012468.1-201ENST00000604888 430 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 FP325313.1-201ENST00000638228 703 ntBASIC1.28□□□□□ -2.2
SYNE1Q8NF91 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC1.28□□□□□ -2.2
SYNE1Q8NF91 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms