Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CHD3Q12873 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.73□□□□□ -1.81
CHD3Q12873 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CHD3Q12873 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CHD3Q12873 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC3.73□□□□□ -1.81
CHD3Q12873 RNU1-44P-201ENST00000384453 163 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 RPL23AP38-201ENST00000423801 469 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 RPS7P7-201ENST00000463499 571 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 RPL35P6-201ENST00000490024 372 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC3.73□□□□□ -1.81
CHD3Q12873 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC3.73□□□□□ -1.81
CHD3Q12873 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.73□□□□□ -1.81
CHD3Q12873 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.73□□□□□ -1.81
CHD3Q12873 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC3.73□□□□□ -1.81
CHD3Q12873 OR5BC1P-201ENST00000529327 739 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC3.73□□□□□ -1.81
CHD3Q12873 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC3.73□□□□□ -1.81
CHD3Q12873 RPL23AP97-201ENST00000568955 471 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC3.73□□□□□ -1.81
CHD3Q12873 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC3.73□□□□□ -1.81
CHD3Q12873 AC008966.2-201ENST00000606157 453 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 AC020634.1-201ENST00000608701 549 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 AC015922.4-201ENST00000612568 690 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 AL158196.1-201ENST00000616786 434 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 AC023509.5-201ENST00000617434 807 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC3.73□□□□□ -1.81
CHD3Q12873 AP003400.2-201ENST00000624036 666 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.73□□□□□ -1.81
CHD3Q12873 CDRT1-208ENST00000630868 794 ntBASIC3.73□□□□□ -1.81
CHD3Q12873 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CHD3Q12873 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CHD3Q12873 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CHD3Q12873 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC3.73□□□□□ -1.81
CHD3Q12873 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CHD3Q12873 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.72□□□□□ -1.81
CHD3Q12873 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CHD3Q12873 RNA5SP52-201ENST00000362448 134 ntBASIC3.72□□□□□ -1.81
CHD3Q12873 SNORA63.1-201ENST00000362493 131 ntBASIC3.72□□□□□ -1.81
CHD3Q12873 RNA5SP22-201ENST00000365393 109 ntBASIC3.72□□□□□ -1.81
CHD3Q12873 RHOT1P2-201ENST00000366423 333 ntBASIC3.72□□□□□ -1.81
CHD3Q12873 AC004448.2-201ENST00000422360 586 ntBASIC3.72□□□□□ -1.81
CHD3Q12873 RPS26P2-201ENST00000440331 348 ntBASIC3.72□□□□□ -1.81
CHD3Q12873 ATP5G1P3-201ENST00000463301 410 ntBASIC3.72□□□□□ -1.81
CHD3Q12873 RN7SL810P-201ENST00000493031 276 ntBASIC3.72□□□□□ -1.81
CHD3Q12873 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC3.72□□□□□ -1.81
CHD3Q12873 MYL12AP1-201ENST00000518490 515 ntBASIC3.72□□□□□ -1.81
CHD3Q12873 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.72□□□□□ -1.81
CHD3Q12873 AC084783.1-201ENST00000565846 910 ntBASIC3.72□□□□□ -1.81
CHD3Q12873 AC087468.1-201ENST00000604365 630 ntBASIC3.72□□□□□ -1.81
CHD3Q12873 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC3.72□□□□□ -1.81
CHD3Q12873 AC084757.4-201ENST00000616350 526 ntBASIC3.72□□□□□ -1.81
CHD3Q12873 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CHD3Q12873 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC3.72□□□□□ -1.81
CHD3Q12873 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CHD3Q12873 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
CHD3Q12873 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
CHD3Q12873 AL121834.1-202ENST00000404494 277 ntBASIC3.71□□□□□ -1.81
CHD3Q12873 RAB9AP4-201ENST00000415230 609 ntBASIC3.71□□□□□ -1.81
CHD3Q12873 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.71□□□□□ -1.81
CHD3Q12873 ARAFP1-201ENST00000422172 605 ntBASIC3.71□□□□□ -1.81
CHD3Q12873 BTF3P10-201ENST00000433415 495 ntBASIC3.71□□□□□ -1.81
CHD3Q12873 RPL21P89-201ENST00000444021 467 ntBASIC3.71□□□□□ -1.81
CHD3Q12873 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC3.71□□□□□ -1.81
CHD3Q12873 RPL23AP2-201ENST00000471227 466 ntBASIC3.71□□□□□ -1.81
CHD3Q12873 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
CHD3Q12873 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC3.71□□□□□ -1.81
CHD3Q12873 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC3.71□□□□□ -1.81
CHD3Q12873 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC3.71□□□□□ -1.81
CHD3Q12873 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC3.71□□□□□ -1.81
CHD3Q12873 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.81
CHD3Q12873 AC008126.1-201ENST00000549019 480 ntBASIC3.71□□□□□ -1.81
CHD3Q12873 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.71□□□□□ -1.81
CHD3Q12873 AC027455.1-201ENST00000574104 594 ntBASIC3.71□□□□□ -1.81
CHD3Q12873 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC3.71□□□□□ -1.81
CHD3Q12873 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC3.71□□□□□ -1.81
CHD3Q12873 AC006065.6-201ENST00000625201 545 ntBASIC3.71□□□□□ -1.81
CHD3Q12873 AC012442.3-202ENST00000636742 206 ntBASIC3.71□□□□□ -1.81
CHD3Q12873 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC3.71□□□□□ -1.81
CHD3Q12873 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
CHD3Q12873 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC3.71□□□□□ -1.81
CHD3Q12873 LARP1BP1-201ENST00000506036 1359 ntBASIC3.71□□□□□ -1.82
CHD3Q12873 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CHD3Q12873 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.71□□□□□ -1.82
CHD3Q12873 AC032011.1-201ENST00000611703 1549 ntBASIC3.71□□□□□ -1.82
CHD3Q12873 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
CHD3Q12873 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CHD3Q12873 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.71□□□□□ -1.82
CHD3Q12873 MIR372-201ENST00000362225 67 ntBASIC3.71□□□□□ -1.82
CHD3Q12873 MIR331-201ENST00000362302 94 ntBASIC3.71□□□□□ -1.82
CHD3Q12873 SNORA71.3-201ENST00000362582 128 ntBASIC3.71□□□□□ -1.82
CHD3Q12873 KRR1P1-201ENST00000419430 803 ntBASIC3.71□□□□□ -1.82
CHD3Q12873 DNAJA1P1-201ENST00000425106 1187 ntBASIC3.71□□□□□ -1.82
CHD3Q12873 YME1L1P1-201ENST00000429435 297 ntBASIC3.71□□□□□ -1.82
CHD3Q12873 CDY14P-201ENST00000431260 1014 ntBASIC3.71□□□□□ -1.82
CHD3Q12873 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.71□□□□□ -1.82
CHD3Q12873 CDY12P-201ENST00000440679 1015 ntBASIC3.71□□□□□ -1.82
CHD3Q12873 CDY13P-201ENST00000445813 1015 ntBASIC3.71□□□□□ -1.82
CHD3Q12873 CDY23P-201ENST00000451661 1014 ntBASIC3.71□□□□□ -1.82
CHD3Q12873 AC133473.1-201ENST00000455173 299 ntBASIC3.71□□□□□ -1.82
CHD3Q12873 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms