Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AP001002.1-201ENST00000625148 1513 ntBASIC4.82□□□□□ -1.64
HMGCS2P54868 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HMGCS2P54868 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
HMGCS2P54868 AC006042.3-201ENST00000454684 1469 ntBASIC4.81□□□□□ -1.64
HMGCS2P54868 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.81□□□□□ -1.64
HMGCS2P54868 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
HMGCS2P54868 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HMGCS2P54868 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HMGCS2P54868 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
HMGCS2P54868 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HMGCS2P54868 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
HMGCS2P54868 SNORA70.4-201ENST00000365509 134 ntBASIC4.81□□□□□ -1.64
HMGCS2P54868 MIR1179-201ENST00000408703 91 ntBASIC4.81□□□□□ -1.64
HMGCS2P54868 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HMGCS2P54868 AL500522.2-201ENST00000448562 343 ntBASIC4.81□□□□□ -1.64
HMGCS2P54868 AC091564.1-201ENST00000464563 479 ntBASIC4.81□□□□□ -1.64
HMGCS2P54868 SEPT7P6-201ENST00000469999 1143 ntBASIC4.81□□□□□ -1.64
HMGCS2P54868 AC007688.1-201ENST00000475592 759 ntBASIC4.81□□□□□ -1.64
HMGCS2P54868 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.81□□□□□ -1.64
HMGCS2P54868 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.81□□□□□ -1.64
HMGCS2P54868 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.81□□□□□ -1.64
HMGCS2P54868 AC026616.1-201ENST00000523157 525 ntBASIC4.81□□□□□ -1.64
HMGCS2P54868 OR7E10P-201ENST00000526420 991 ntBASIC4.81□□□□□ -1.64
HMGCS2P54868 AL121839.1-201ENST00000556233 1185 ntBASIC4.81□□□□□ -1.64
HMGCS2P54868 AC016911.1-201ENST00000613297 452 ntBASIC4.81□□□□□ -1.64
HMGCS2P54868 AL118556.2-201ENST00000614375 824 ntBASIC4.81□□□□□ -1.64
HMGCS2P54868 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.81□□□□□ -1.64
HMGCS2P54868 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.81□□□□□ -1.64
HMGCS2P54868 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.81□□□□□ -1.64
HMGCS2P54868 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC4.81□□□□□ -1.64
HMGCS2P54868 AC012442.3-202ENST00000636742 206 ntBASIC4.81□□□□□ -1.64
HMGCS2P54868 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HMGCS2P54868 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HMGCS2P54868 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
HMGCS2P54868 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
HMGCS2P54868 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HMGCS2P54868 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HMGCS2P54868 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.81□□□□□ -1.64
HMGCS2P54868 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.81□□□□□ -1.64
HMGCS2P54868 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
HMGCS2P54868 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HMGCS2P54868 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HMGCS2P54868 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HMGCS2P54868 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HMGCS2P54868 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
HMGCS2P54868 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HMGCS2P54868 RNA5SP124-201ENST00000362739 110 ntBASIC4.8□□□□□ -1.64
HMGCS2P54868 RNU6-1320P-201ENST00000390838 107 ntBASIC4.8□□□□□ -1.64
HMGCS2P54868 RNU6-1269P-201ENST00000391139 107 ntBASIC4.8□□□□□ -1.64
HMGCS2P54868 AL161631.1-201ENST00000417933 486 ntBASIC4.8□□□□□ -1.64
HMGCS2P54868 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC4.8□□□□□ -1.64
HMGCS2P54868 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC4.8□□□□□ -1.64
HMGCS2P54868 HMGN2P27-201ENST00000427352 270 ntBASIC4.8□□□□□ -1.64
HMGCS2P54868 AL035246.1-201ENST00000433554 1255 ntBASIC4.8□□□□□ -1.64
HMGCS2P54868 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC4.8□□□□□ -1.64
HMGCS2P54868 RPS27AP15-201ENST00000447672 466 ntBASIC4.8□□□□□ -1.64
HMGCS2P54868 AL133547.1-201ENST00000448546 220 ntBASIC4.8□□□□□ -1.64
HMGCS2P54868 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC4.8□□□□□ -1.64
HMGCS2P54868 RNU6-599P-201ENST00000459383 107 ntBASIC4.8□□□□□ -1.64
HMGCS2P54868 RNU6-1193P-201ENST00000459461 107 ntBASIC4.8□□□□□ -1.64
HMGCS2P54868 AC108022.1-201ENST00000493466 478 ntBASIC4.8□□□□□ -1.64
HMGCS2P54868 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC4.8□□□□□ -1.64
HMGCS2P54868 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.8□□□□□ -1.64
HMGCS2P54868 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.8□□□□□ -1.64
HMGCS2P54868 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC4.8□□□□□ -1.64
HMGCS2P54868 AC009852.2-201ENST00000567898 485 ntBASIC4.8□□□□□ -1.64
HMGCS2P54868 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC4.8□□□□□ -1.64
HMGCS2P54868 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HMGCS2P54868 AC006363.1-201ENST00000603806 463 ntBASIC4.8□□□□□ -1.64
HMGCS2P54868 AL159169.2-201ENST00000610061 1269 ntBASIC4.8□□□□□ -1.64
HMGCS2P54868 RNU6-368P-201ENST00000620928 107 ntBASIC4.8□□□□□ -1.64
HMGCS2P54868 RNU6-538P-201ENST00000622329 107 ntBASIC4.8□□□□□ -1.64
HMGCS2P54868 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
HMGCS2P54868 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HMGCS2P54868 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
HMGCS2P54868 AL592182.3-201ENST00000642132 3304 ntBASIC4.8□□□□□ -1.64
HMGCS2P54868 AC006484.1-201ENST00000435086 1884 ntBASIC4.79□□□□□ -1.64
HMGCS2P54868 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HMGCS2P54868 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HMGCS2P54868 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
HMGCS2P54868 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HMGCS2P54868 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
HMGCS2P54868 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
HMGCS2P54868 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.79□□□□□ -1.64
HMGCS2P54868 MIR208A-201ENST00000362287 71 ntBASIC4.79□□□□□ -1.64
HMGCS2P54868 MIR200C-201ENST00000384980 68 ntBASIC4.79□□□□□ -1.64
HMGCS2P54868 AL590704.1-201ENST00000402856 794 ntBASIC4.79□□□□□ -1.64
HMGCS2P54868 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC4.79□□□□□ -1.64
HMGCS2P54868 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.79□□□□□ -1.64
HMGCS2P54868 OR5BE1P-201ENST00000425977 939 ntBASIC4.79□□□□□ -1.64
HMGCS2P54868 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC4.79□□□□□ -1.64
HMGCS2P54868 RPL37P1-201ENST00000432310 284 ntBASIC4.79□□□□□ -1.64
HMGCS2P54868 TBCAP1-201ENST00000436520 327 ntBASIC4.79□□□□□ -1.64
HMGCS2P54868 AL138787.1-202ENST00000437804 898 ntBASIC4.79□□□□□ -1.64
HMGCS2P54868 RPS4XP4-201ENST00000443195 763 ntBASIC4.79□□□□□ -1.64
HMGCS2P54868 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.79□□□□□ -1.64
HMGCS2P54868 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.79□□□□□ -1.64
HMGCS2P54868 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.79□□□□□ -1.64
HMGCS2P54868 EIF2S2P5-201ENST00000457635 968 ntBASIC4.79□□□□□ -1.64
HMGCS2P54868 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms