Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.24□□□□□ -1.73
SHOX2O60902 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.24□□□□□ -1.73
SHOX2O60902 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.24□□□□□ -1.73
SHOX2O60902 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.24□□□□□ -1.73
SHOX2O60902 AC244505.7-201ENST00000599675 272 ntBASIC4.24□□□□□ -1.73
SHOX2O60902 AC073091.2-201ENST00000603205 907 ntBASIC4.24□□□□□ -1.73
SHOX2O60902 AC104662.1-201ENST00000604448 511 ntBASIC4.24□□□□□ -1.73
SHOX2O60902 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC4.24□□□□□ -1.73
SHOX2O60902 AC004825.2-201ENST00000616634 455 ntBASIC4.24□□□□□ -1.73
SHOX2O60902 AC112694.2-201ENST00000623697 768 ntBASIC4.24□□□□□ -1.73
SHOX2O60902 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.24□□□□□ -1.73
SHOX2O60902 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
SHOX2O60902 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.24□□□□□ -1.73
SHOX2O60902 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
SHOX2O60902 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.24□□□□□ -1.73
SHOX2O60902 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
SHOX2O60902 IPO8P1-201ENST00000455509 3109 ntBASIC4.24□□□□□ -1.73
SHOX2O60902 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.23□□□□□ -1.73
SHOX2O60902 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.23□□□□□ -1.73
SHOX2O60902 AC108467.2-201ENST00000617640 1597 ntBASIC4.23□□□□□ -1.73
SHOX2O60902 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.23□□□□□ -1.73
SHOX2O60902 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SHOX2O60902 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SHOX2O60902 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC4.23□□□□□ -1.73
SHOX2O60902 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SHOX2O60902 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
SHOX2O60902 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.23□□□□□ -1.73
SHOX2O60902 AL035419.1-201ENST00000397037 564 ntBASIC4.23□□□□□ -1.73
SHOX2O60902 OR1F12-201ENST00000402365 945 ntBASIC4.23□□□□□ -1.73
SHOX2O60902 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.23□□□□□ -1.73
SHOX2O60902 RPL17P36-201ENST00000420302 549 ntBASIC4.23□□□□□ -1.73
SHOX2O60902 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.23□□□□□ -1.73
SHOX2O60902 NPM1P34-201ENST00000428821 893 ntBASIC4.23□□□□□ -1.73
SHOX2O60902 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC4.23□□□□□ -1.73
SHOX2O60902 AP000936.3-201ENST00000438127 255 ntBASIC4.23□□□□□ -1.73
SHOX2O60902 RPL10P17-201ENST00000453852 316 ntBASIC4.23□□□□□ -1.73
SHOX2O60902 AL133244.1-201ENST00000456007 258 ntBASIC4.23□□□□□ -1.73
SHOX2O60902 EIF2S2P4-201ENST00000461070 984 ntBASIC4.23□□□□□ -1.73
SHOX2O60902 AC010307.1-201ENST00000467206 836 ntBASIC4.23□□□□□ -1.73
SHOX2O60902 RPL35AP15-201ENST00000468042 339 ntBASIC4.23□□□□□ -1.73
SHOX2O60902 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.23□□□□□ -1.73
SHOX2O60902 UBA52P3-201ENST00000491303 382 ntBASIC4.23□□□□□ -1.73
SHOX2O60902 PRELID3BP7-201ENST00000503606 469 ntBASIC4.23□□□□□ -1.73
SHOX2O60902 AC021146.1-201ENST00000511202 716 ntBASIC4.23□□□□□ -1.73
SHOX2O60902 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4.23□□□□□ -1.73
SHOX2O60902 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC4.23□□□□□ -1.73
SHOX2O60902 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.23□□□□□ -1.73
SHOX2O60902 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.23□□□□□ -1.73
SHOX2O60902 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SHOX2O60902 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.23□□□□□ -1.73
SHOX2O60902 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC4.23□□□□□ -1.73
SHOX2O60902 MIR4436B2-201ENST00000581415 91 ntBASIC4.23□□□□□ -1.73
SHOX2O60902 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SHOX2O60902 MIR4436B1-201ENST00000583272 91 ntBASIC4.23□□□□□ -1.73
SHOX2O60902 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC4.23□□□□□ -1.73
SHOX2O60902 AC087763.1-201ENST00000603391 286 ntBASIC4.23□□□□□ -1.73
SHOX2O60902 AC020910.2-201ENST00000603635 610 ntBASIC4.23□□□□□ -1.73
SHOX2O60902 AC023813.4-201ENST00000607580 580 ntBASIC4.23□□□□□ -1.73
SHOX2O60902 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.23□□□□□ -1.73
SHOX2O60902 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC4.23□□□□□ -1.73
SHOX2O60902 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
SHOX2O60902 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SHOX2O60902 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.23□□□□□ -1.73
SHOX2O60902 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
SHOX2O60902 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.22□□□□□ -1.73
SHOX2O60902 TNPO1P3-201ENST00000436471 2662 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 AC093535.2-201ENST00000624769 2326 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SHOX2O60902 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SHOX2O60902 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SHOX2O60902 AC007529.1-201ENST00000418574 2178 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 RNU1-85P-201ENST00000364127 164 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 RNU6-167P-201ENST00000384292 106 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 RNU6-178P-201ENST00000384631 104 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.22□□□□□ -1.73
SHOX2O60902 MIR1179-201ENST00000408703 91 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 RAB9AP4-201ENST00000415230 609 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 AC009302.1-201ENST00000417147 390 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SHOX2O60902 AP001324.1-201ENST00000428553 399 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SHOX2O60902 AL357520.1-201ENST00000441557 453 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 AL500522.2-201ENST00000448562 343 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 FABP3P2-201ENST00000453169 399 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 MTCO3P16-201ENST00000454456 754 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 AC063943.1-201ENST00000465434 453 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.22□□□□□ -1.73
SHOX2O60902 ATP1B1P1-201ENST00000509767 915 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.22□□□□□ -1.73
SHOX2O60902 KCTD9P2-201ENST00000512203 1013 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 AP001922.4-201ENST00000526967 290 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 AC005000.1-201ENST00000536192 288 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.22□□□□□ -1.73
SHOX2O60902 HMGB3P26-201ENST00000560051 582 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 BNIP3P5-201ENST00000562290 498 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 MTND2P13-201ENST00000577438 1039 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 AP000255.1-201ENST00000610276 676 ntBASIC4.22□□□□□ -1.73
SHOX2O60902 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.22□□□□□ -1.73
SHOX2O60902 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
SHOX2O60902 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms