Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 EPHA3-203ENST00000494014 3085 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AC105074.1-201ENST00000623380 3095 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 OR52B1P-201ENST00000316506 909 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 OR52H1-201ENST00000322653 1057 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 SULT1C3-201ENST00000329106 915 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 OR13F1-201ENST00000334726 960 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 RNU1-39P-201ENST00000383897 165 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 IGKC-201ENST00000390237 523 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 RPSAP35-201ENST00000413753 818 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AC092832.1-201ENST00000422934 400 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 PTPN2P1-201ENST00000423212 1072 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AL513185.2-201ENST00000425543 193 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 UBE2V1P13-201ENST00000436983 439 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 FABP5P2-201ENST00000439042 408 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AC093019.1-201ENST00000443135 252 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 SNRPBP1-201ENST00000443634 282 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 SNRPGP6-201ENST00000451124 220 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AC147651.1-201ENST00000453149 572 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 UBDP1-202ENST00000457888 382 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 RPL17P2-201ENST00000491913 451 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AC022126.1-201ENST00000502995 593 ntTSL 4 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 SNX18P24-201ENST00000505249 671 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AC108159.1-201ENST00000505408 489 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 TBCA-209ENST00000522370 435 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AC113194.1-201ENST00000606037 500 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AC007038.2-201ENST00000608095 740 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AL445647.2-201ENST00000615170 130 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AP002505.2-201ENST00000623585 696 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AP003122.6-201ENST00000623831 495 ntBASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 SCRN1-202ENST00000409497 1732 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CCDC140Q96MF4 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AC108467.2-201ENST00000617640 1597 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AC092326.2-201ENST00000624772 1561 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 CUBNP3-201ENST00000457461 1784 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AL133243.2-201ENST00000610331 1621 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 RNA5SP321-201ENST00000362722 111 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 RNU6-1120P-201ENST00000362988 108 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 SNORA38B-201ENST00000363524 131 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 Y_RNA.356-201ENST00000365475 113 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 TRBV6-7-201ENST00000390373 344 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AC079807.1-201ENST00000429993 481 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AL451164.3-201ENST00000441377 447 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC140Q96MF4 OR52E7P-201ENST00000452394 933 ntBASIC5.16□□□□□ -1.58
CCDC140Q96MF4 RN7SL372P-201ENST00000461982 298 ntBASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms