Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 HMGN1P16-201ENST00000508308 283 ntBASIC5.35□□□□□ -1.55
MSX2P35548 AC138866.2-201ENST00000508650 584 ntBASIC5.35□□□□□ -1.55
MSX2P35548 GUSBP9-201ENST00000510138 584 ntBASIC5.35□□□□□ -1.55
MSX2P35548 TCP11X3P-202ENST00000514289 1254 ntBASIC5.35□□□□□ -1.55
MSX2P35548 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.35□□□□□ -1.55
MSX2P35548 SNORA74.1-201ENST00000516320 180 ntBASIC5.35□□□□□ -1.55
MSX2P35548 FAU-203ENST00000525297 355 ntTSL 5 BASIC5.35□□□□□ -1.55
MSX2P35548 AP000620.1-201ENST00000527147 504 ntBASIC5.35□□□□□ -1.55
MSX2P35548 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC5.35□□□□□ -1.55
MSX2P35548 OR7K1P-201ENST00000546439 926 ntBASIC5.35□□□□□ -1.55
MSX2P35548 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.35□□□□□ -1.55
MSX2P35548 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC5.35□□□□□ -1.55
MSX2P35548 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC5.35□□□□□ -1.55
MSX2P35548 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
MSX2P35548 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC5.35□□□□□ -1.55
MSX2P35548 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC5.35□□□□□ -1.55
MSX2P35548 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC5.35□□□□□ -1.55
MSX2P35548 AC009063.1-201ENST00000563342 702 ntBASIC5.35□□□□□ -1.55
MSX2P35548 AC096996.1-201ENST00000563813 325 ntBASIC5.35□□□□□ -1.55
MSX2P35548 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.35□□□□□ -1.55
MSX2P35548 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC5.35□□□□□ -1.55
MSX2P35548 MIR4675-201ENST00000577898 77 ntBASIC5.35□□□□□ -1.55
MSX2P35548 AC112220.3-201ENST00000605502 502 ntBASIC5.35□□□□□ -1.55
MSX2P35548 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.35□□□□□ -1.55
MSX2P35548 AL589743.7-201ENST00000612637 233 ntBASIC5.35□□□□□ -1.55
MSX2P35548 AC090517.2-201ENST00000614966 680 ntBASIC5.35□□□□□ -1.55
MSX2P35548 AC072046.2-201ENST00000618366 268 ntBASIC5.35□□□□□ -1.55
MSX2P35548 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
MSX2P35548 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.35□□□□□ -1.55
MSX2P35548 OR5AK4P-201ENST00000635912 903 ntBASIC5.35□□□□□ -1.55
MSX2P35548 AC099654.10-201ENST00000640395 161 ntBASIC5.35□□□□□ -1.55
MSX2P35548 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSX2P35548 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSX2P35548 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
MSX2P35548 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSX2P35548 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSX2P35548 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
MSX2P35548 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.35□□□□□ -1.55
MSX2P35548 AC112198.2-201ENST00000426589 6996 ntBASIC5.34□□□□□ -1.55
MSX2P35548 AC006484.1-201ENST00000435086 1884 ntBASIC5.34□□□□□ -1.55
MSX2P35548 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
MSX2P35548 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
MSX2P35548 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
MSX2P35548 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC5.34□□□□□ -1.55
MSX2P35548 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
MSX2P35548 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
MSX2P35548 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
MSX2P35548 MTND4P29-201ENST00000503122 1372 ntBASIC5.34□□□□□ -1.55
MSX2P35548 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
MSX2P35548 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
MSX2P35548 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
MSX2P35548 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
MSX2P35548 Y_RNA.18-201ENST00000362461 102 ntBASIC5.34□□□□□ -1.55
MSX2P35548 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
MSX2P35548 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
MSX2P35548 RNU6-1042P-201ENST00000384204 107 ntBASIC5.34□□□□□ -1.55
MSX2P35548 RNU6-348P-201ENST00000384386 107 ntBASIC5.34□□□□□ -1.55
MSX2P35548 RNU6-244P-201ENST00000391028 104 ntBASIC5.34□□□□□ -1.55
MSX2P35548 BTF3P7-201ENST00000407097 488 ntBASIC5.34□□□□□ -1.55
MSX2P35548 RN7SKP29-201ENST00000410957 272 ntBASIC5.34□□□□□ -1.55
MSX2P35548 AL357752.1-201ENST00000412817 349 ntBASIC5.34□□□□□ -1.55
MSX2P35548 RPSAP35-201ENST00000413753 818 ntBASIC5.34□□□□□ -1.55
MSX2P35548 RPL21P108-201ENST00000413857 481 ntBASIC5.34□□□□□ -1.55
MSX2P35548 RPL23AP39-201ENST00000415533 405 ntBASIC5.34□□□□□ -1.55
MSX2P35548 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.34□□□□□ -1.55
MSX2P35548 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC5.34□□□□□ -1.55
MSX2P35548 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC5.34□□□□□ -1.55
MSX2P35548 AL133244.1-201ENST00000456007 258 ntBASIC5.34□□□□□ -1.55
MSX2P35548 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.34□□□□□ -1.55
MSX2P35548 RPS23P2-201ENST00000463671 415 ntBASIC5.34□□□□□ -1.55
MSX2P35548 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
MSX2P35548 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC5.34□□□□□ -1.55
MSX2P35548 ACTG1P13-201ENST00000486987 1043 ntBASIC5.34□□□□□ -1.55
MSX2P35548 KRT19P6-201ENST00000510983 209 ntBASIC5.34□□□□□ -1.55
MSX2P35548 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC5.34□□□□□ -1.55
MSX2P35548 NPM1P6-201ENST00000521088 871 ntBASIC5.34□□□□□ -1.55
MSX2P35548 TRIM51DP-201ENST00000529746 596 ntBASIC5.34□□□□□ -1.55
MSX2P35548 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC5.34□□□□□ -1.55
MSX2P35548 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
MSX2P35548 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC5.34□□□□□ -1.55
MSX2P35548 AC068305.2-201ENST00000550567 1205 ntBASIC5.34□□□□□ -1.55
MSX2P35548 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.34□□□□□ -1.55
MSX2P35548 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC5.34□□□□□ -1.55
MSX2P35548 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC5.34□□□□□ -1.55
MSX2P35548 NIFKP8-201ENST00000560500 874 ntBASIC5.34□□□□□ -1.55
MSX2P35548 NPM1P47-201ENST00000560843 856 ntBASIC5.34□□□□□ -1.55
MSX2P35548 ANKRD36BP2-206ENST00000575193 1245 ntBASIC5.34□□□□□ -1.55
MSX2P35548 AP005119.1-201ENST00000580956 292 ntBASIC5.34□□□□□ -1.55
MSX2P35548 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC5.34□□□□□ -1.55
MSX2P35548 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC5.34□□□□□ -1.55
MSX2P35548 AC011500.1-201ENST00000601963 469 ntBASIC5.34□□□□□ -1.55
MSX2P35548 AC068768.2-201ENST00000602352 343 ntBASIC5.34□□□□□ -1.55
MSX2P35548 AC119501.1-201ENST00000603646 475 ntBASIC5.34□□□□□ -1.55
MSX2P35548 AC091965.4-201ENST00000607691 587 ntBASIC5.34□□□□□ -1.55
MSX2P35548 AC069209.1-201ENST00000619282 651 ntBASIC5.34□□□□□ -1.55
MSX2P35548 AC104985.2-201ENST00000620598 500 ntBASIC5.34□□□□□ -1.55
MSX2P35548 AL356321.1-201ENST00000621360 228 ntBASIC5.34□□□□□ -1.55
MSX2P35548 MIR6823-201ENST00000622118 61 ntBASIC5.34□□□□□ -1.55
MSX2P35548 AC145207.9-201ENST00000623802 325 ntBASIC5.34□□□□□ -1.55
MSX2P35548 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms