Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC4.25□□□□□ -1.73
SHMT2P34897 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.25□□□□□ -1.73
SHMT2P34897 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.25□□□□□ -1.73
SHMT2P34897 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.25□□□□□ -1.73
SHMT2P34897 AC025175.1-201ENST00000606482 759 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 AL121890.3-201ENST00000618494 516 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
SHMT2P34897 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SHMT2P34897 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
SHMT2P34897 MAPK10-253ENST00000641010 4072 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.25□□□□□ -1.73
SHMT2P34897 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SHMT2P34897 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
SHMT2P34897 ASNSP1-201ENST00000518311 1939 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
SHMT2P34897 EIF2AP4-201ENST00000424793 1781 ntBASIC4.25□□□□□ -1.73
SHMT2P34897 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
SHMT2P34897 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
SHMT2P34897 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.24□□□□□ -1.73
SHMT2P34897 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
SHMT2P34897 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SHMT2P34897 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SHMT2P34897 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.24□□□□□ -1.73
SHMT2P34897 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.24□□□□□ -1.73
SHMT2P34897 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
SHMT2P34897 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.24□□□□□ -1.73
SHMT2P34897 MIR331-201ENST00000362302 94 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 SNORD74.4-201ENST00000364129 80 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 RNA5SP22-201ENST00000365393 109 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
SHMT2P34897 RNA5SP39-201ENST00000411245 120 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 AC011933.1-201ENST00000413334 321 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 AC009302.1-201ENST00000417147 390 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.24□□□□□ -1.73
SHMT2P34897 AC093084.1-201ENST00000424233 687 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC4.24□□□□□ -1.73
SHMT2P34897 AC073143.1-201ENST00000436316 395 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 ACTR3P2-201ENST00000439585 1257 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 AL353748.1-201ENST00000440753 474 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 AL157884.3-201ENST00000448273 1184 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 RPL10P17-201ENST00000453852 316 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 HSPE1P22-201ENST00000456856 327 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 AC116533.1-201ENST00000459748 321 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 RPS20P4-201ENST00000461659 355 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 RN7SL303P-201ENST00000469773 251 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.24□□□□□ -1.73
SHMT2P34897 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.24□□□□□ -1.73
SHMT2P34897 STRADBP1-201ENST00000478954 1281 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 PPM1AP1-201ENST00000502740 1135 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 AC124068.1-201ENST00000563131 678 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.24□□□□□ -1.73
SHMT2P34897 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
SHMT2P34897 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC4.24□□□□□ -1.73
SHMT2P34897 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.24□□□□□ -1.73
SHMT2P34897 AC022387.2-201ENST00000604050 448 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 AL160290.3-201ENST00000604869 165 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 Z98200.1-201ENST00000607298 470 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
SHMT2P34897 AC015908.5-201ENST00000623289 343 ntBASIC4.24□□□□□ -1.73
SHMT2P34897 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC4.24□□□□□ -1.73
SHMT2P34897 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC4.24□□□□□ -1.73
SHMT2P34897 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.24□□□□□ -1.73
SHMT2P34897 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
SHMT2P34897 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.24□□□□□ -1.73
SHMT2P34897 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SHMT2P34897 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SHMT2P34897 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SHMT2P34897 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.23□□□□□ -1.73
SHMT2P34897 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
SHMT2P34897 MAPK10-304ENST00000641341 3984 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SHMT2P34897 OR10J6P-201ENST00000289731 930 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 RNA5SP175-201ENST00000364275 119 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 MIR7-1-201ENST00000384871 110 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 MIR708-201ENST00000390708 88 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 AC104297.1-201ENST00000393779 870 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 LAP3P1-201ENST00000403648 294 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.23□□□□□ -1.73
SHMT2P34897 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC4.23□□□□□ -1.73
SHMT2P34897 UBTFL3-201ENST00000418934 1024 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 AC004552.1-201ENST00000419089 348 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC4.23□□□□□ -1.73
SHMT2P34897 EIF1P3-201ENST00000423841 334 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 MTND4LP13-201ENST00000425022 298 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SHMT2P34897 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.23□□□□□ -1.73
SHMT2P34897 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC4.23□□□□□ -1.73
SHMT2P34897 AL357520.1-201ENST00000441557 453 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC4.23□□□□□ -1.73
SHMT2P34897 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC4.23□□□□□ -1.73
SHMT2P34897 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC4.23□□□□□ -1.73
SHMT2P34897 HNRNPDLP3-201ENST00000456745 380 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC4.23□□□□□ -1.73
SHMT2P34897 RPS26P3-201ENST00000470205 348 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 UBTFL6-201ENST00000477929 1024 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 AC090543.2-201ENST00000483963 348 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 AC004057.1-201ENST00000485827 348 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 RPS27AP16-201ENST00000492222 470 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 AC010374.1-201ENST00000503762 1237 ntBASIC4.23□□□□□ -1.73
SHMT2P34897 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms