Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
PTPN4P29074 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
PTPN4P29074 CDH12P2-201ENST00000504393 298 ntBASIC4.57□□□□□ -1.68
PTPN4P29074 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.57□□□□□ -1.68
PTPN4P29074 AC111000.3-201ENST00000508057 576 ntBASIC4.57□□□□□ -1.68
PTPN4P29074 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.57□□□□□ -1.68
PTPN4P29074 HPRT1P1-201ENST00000509498 657 ntBASIC4.57□□□□□ -1.68
PTPN4P29074 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.57□□□□□ -1.68
PTPN4P29074 RNU6-347P-201ENST00000516658 105 ntBASIC4.57□□□□□ -1.68
PTPN4P29074 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.57□□□□□ -1.68
PTPN4P29074 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC4.57□□□□□ -1.68
PTPN4P29074 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.57□□□□□ -1.68
PTPN4P29074 AL049839.1-201ENST00000556151 657 ntBASIC4.57□□□□□ -1.68
PTPN4P29074 AC090515.3-201ENST00000560431 315 ntBASIC4.57□□□□□ -1.68
PTPN4P29074 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.57□□□□□ -1.68
PTPN4P29074 HNRNPCP4-201ENST00000571636 900 ntBASIC4.57□□□□□ -1.68
PTPN4P29074 MIR4284-201ENST00000578924 81 ntBASIC4.57□□□□□ -1.68
PTPN4P29074 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.57□□□□□ -1.68
PTPN4P29074 AC104307.1-201ENST00000616142 196 ntBASIC4.57□□□□□ -1.68
PTPN4P29074 AC009318.3-201ENST00000616916 503 ntBASIC4.57□□□□□ -1.68
PTPN4P29074 AC139769.3-201ENST00000618383 175 ntBASIC4.57□□□□□ -1.68
PTPN4P29074 AL022401.1-201ENST00000619498 108 ntBASIC4.57□□□□□ -1.68
PTPN4P29074 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.57□□□□□ -1.68
PTPN4P29074 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
PTPN4P29074 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.57□□□□□ -1.68
PTPN4P29074 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
PTPN4P29074 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
PTPN4P29074 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
PTPN4P29074 AL049555.1-201ENST00000562834 1933 ntBASIC4.56□□□□□ -1.68
PTPN4P29074 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
PTPN4P29074 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
PTPN4P29074 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
PTPN4P29074 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
PTPN4P29074 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
PTPN4P29074 OR4K15-201ENST00000305051 1216 ntBASIC4.56□□□□□ -1.68
PTPN4P29074 AC067945.1-201ENST00000342609 618 ntBASIC4.56□□□□□ -1.68
PTPN4P29074 SNORD74.4-201ENST00000364129 80 ntBASIC4.56□□□□□ -1.68
PTPN4P29074 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
PTPN4P29074 FABP12P1-201ENST00000401911 322 ntBASIC4.56□□□□□ -1.68
PTPN4P29074 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.56□□□□□ -1.68
PTPN4P29074 RSU1P3-201ENST00000412878 835 ntBASIC4.56□□□□□ -1.68
PTPN4P29074 ATG4AP1-201ENST00000416893 538 ntBASIC4.56□□□□□ -1.68
PTPN4P29074 CR848007.2-201ENST00000424918 787 ntBASIC4.56□□□□□ -1.68
PTPN4P29074 EIF2S2P3-201ENST00000428356 999 ntBASIC4.56□□□□□ -1.68
PTPN4P29074 RPS17P8-201ENST00000434525 335 ntBASIC4.56□□□□□ -1.68
PTPN4P29074 AC016831.4-201ENST00000438302 307 ntBASIC4.56□□□□□ -1.68
PTPN4P29074 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC4.56□□□□□ -1.68
PTPN4P29074 TPT1P12-201ENST00000448968 492 ntBASIC4.56□□□□□ -1.68
PTPN4P29074 RPL12P20-201ENST00000475538 479 ntBASIC4.56□□□□□ -1.68
PTPN4P29074 SCARNA22-201ENST00000503991 125 ntBASIC4.56□□□□□ -1.68
PTPN4P29074 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.56□□□□□ -1.68
PTPN4P29074 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC4.56□□□□□ -1.68
PTPN4P29074 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.56□□□□□ -1.68
PTPN4P29074 BUD31P1-201ENST00000521828 359 ntBASIC4.56□□□□□ -1.68
PTPN4P29074 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC4.56□□□□□ -1.68
PTPN4P29074 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC4.56□□□□□ -1.68
PTPN4P29074 AC008083.2-201ENST00000546707 476 ntBASIC4.56□□□□□ -1.68
PTPN4P29074 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.56□□□□□ -1.68
PTPN4P29074 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
PTPN4P29074 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC4.56□□□□□ -1.68
PTPN4P29074 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.56□□□□□ -1.68
PTPN4P29074 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.56□□□□□ -1.68
PTPN4P29074 AL049844.2-201ENST00000604280 628 ntBASIC4.56□□□□□ -1.68
PTPN4P29074 AC015802.5-201ENST00000607478 399 ntBASIC4.56□□□□□ -1.68
PTPN4P29074 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC4.56□□□□□ -1.68
PTPN4P29074 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
PTPN4P29074 AL118508.4-201ENST00000624142 1176 ntBASIC4.56□□□□□ -1.68
PTPN4P29074 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC4.56□□□□□ -1.68
PTPN4P29074 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.56□□□□□ -1.68
PTPN4P29074 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
PTPN4P29074 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
PTPN4P29074 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
PTPN4P29074 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
PTPN4P29074 A2MP1-204ENST00000566278 4130 ntBASIC4.56□□□□□ -1.68
PTPN4P29074 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.56□□□□□ -1.68
PTPN4P29074 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
PTPN4P29074 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
PTPN4P29074 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
PTPN4P29074 AC010928.1-201ENST00000592477 1447 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 AC026951.1-201ENST00000559530 2459 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
PTPN4P29074 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
PTPN4P29074 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.55□□□□□ -1.68
PTPN4P29074 AL590240.1-201ENST00000334118 313 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 RNA5SP151-201ENST00000365632 117 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
PTPN4P29074 RNU4-31P-201ENST00000384211 141 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 RNU6-31P-201ENST00000384388 108 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 MIR513A2-201ENST00000385249 127 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
PTPN4P29074 U3.30-201ENST00000391308 210 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 RN7SKP106-201ENST00000410832 272 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.55□□□□□ -1.68
PTPN4P29074 CENPIP1-201ENST00000425713 902 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 CNOT7P1-201ENST00000429006 852 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 BX119904.1-201ENST00000432026 348 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 AC091390.1-201ENST00000433904 331 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC4.55□□□□□ -1.68
PTPN4P29074 HLA-N-201ENST00000437516 135 ntBASIC4.55□□□□□ -1.68
PTPN4P29074 CYCSP42-201ENST00000450823 238 ntBASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms