Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A3P12111 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL6A3P12111 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
COL6A3P12111 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC4.07□□□□□ -1.76
COL6A3P12111 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL6A3P12111 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.07□□□□□ -1.76
COL6A3P12111 RNU4-82P-201ENST00000362443 140 ntBASIC4.07□□□□□ -1.76
COL6A3P12111 ZNF602P-201ENST00000405929 924 ntBASIC4.07□□□□□ -1.76
COL6A3P12111 AL158071.1-201ENST00000430315 461 ntBASIC4.07□□□□□ -1.76
COL6A3P12111 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC4.07□□□□□ -1.76
COL6A3P12111 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC4.07□□□□□ -1.76
COL6A3P12111 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC4.07□□□□□ -1.76
COL6A3P12111 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.07□□□□□ -1.76
COL6A3P12111 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC4.07□□□□□ -1.76
COL6A3P12111 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC4.07□□□□□ -1.76
COL6A3P12111 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
COL6A3P12111 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL6A3P12111 UTY-209ENST00000537580 6490 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
COL6A3P12111 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
COL6A3P12111 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL6A3P12111 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL6A3P12111 ZNF736P2Y-201ENST00000416040 1279 ntBASIC4.07□□□□□ -1.76
COL6A3P12111 AC005002.1-201ENST00000447458 540 ntBASIC4.07□□□□□ -1.76
COL6A3P12111 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL6A3P12111 AC103881.1-201ENST00000603476 538 ntBASIC4.07□□□□□ -1.76
COL6A3P12111 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC4.07□□□□□ -1.76
COL6A3P12111 HSPA8P17-201ENST00000427029 1382 ntBASIC4.07□□□□□ -1.76
COL6A3P12111 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL6A3P12111 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
COL6A3P12111 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.06□□□□□ -1.76
COL6A3P12111 AC234772.1-201ENST00000377927 937 ntBASIC4.06□□□□□ -1.76
COL6A3P12111 AL513124.1-201ENST00000450410 614 ntBASIC4.06□□□□□ -1.76
COL6A3P12111 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.06□□□□□ -1.76
COL6A3P12111 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC4.06□□□□□ -1.76
COL6A3P12111 RN7SKP31-201ENST00000516354 278 ntBASIC4.06□□□□□ -1.76
COL6A3P12111 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.06□□□□□ -1.76
COL6A3P12111 AC007546.2-201ENST00000623996 360 ntBASIC4.06□□□□□ -1.76
COL6A3P12111 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC4.06□□□□□ -1.76
COL6A3P12111 TRIM51GP-201ENST00000534741 1350 ntBASIC4.06□□□□□ -1.76
COL6A3P12111 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL6A3P12111 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
COL6A3P12111 ZNF807-201ENST00000328088 1707 ntBASIC4.06□□□□□ -1.76
COL6A3P12111 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL6A3P12111 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.06□□□□□ -1.76
COL6A3P12111 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC4.06□□□□□ -1.76
COL6A3P12111 RPL21P91-201ENST00000429231 479 ntBASIC4.06□□□□□ -1.76
COL6A3P12111 RPS20P32-201ENST00000456044 356 ntBASIC4.06□□□□□ -1.76
COL6A3P12111 RPL36AP13-201ENST00000457490 317 ntBASIC4.06□□□□□ -1.76
COL6A3P12111 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.06□□□□□ -1.76
COL6A3P12111 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL6A3P12111 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC4.06□□□□□ -1.76
COL6A3P12111 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.06□□□□□ -1.76
COL6A3P12111 NPM1P47-201ENST00000560843 856 ntBASIC4.06□□□□□ -1.76
COL6A3P12111 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL6A3P12111 AC093849.1-201ENST00000563631 2209 ntBASIC4.06□□□□□ -1.76
COL6A3P12111 AL360270.2-201ENST00000562952 5985 ntBASIC4.06□□□□□ -1.76
COL6A3P12111 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
COL6A3P12111 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL6A3P12111 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL6A3P12111 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL6A3P12111 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC4.06□□□□□ -1.76
COL6A3P12111 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL6A3P12111 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC4.06□□□□□ -1.76
COL6A3P12111 EIF4HP2-201ENST00000424380 563 ntBASIC4.06□□□□□ -1.76
COL6A3P12111 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC4.06□□□□□ -1.76
COL6A3P12111 RNA5SP497-201ENST00000516081 97 ntBASIC4.06□□□□□ -1.76
COL6A3P12111 AC011611.1-201ENST00000552179 197 ntBASIC4.06□□□□□ -1.76
COL6A3P12111 AL160290.3-201ENST00000604869 165 ntBASIC4.06□□□□□ -1.76
COL6A3P12111 AL672167.1-204ENST00000641875 3017 ntBASIC4.06□□□□□ -1.76
COL6A3P12111 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL6A3P12111 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL6A3P12111 ITSN2-213ENST00000622089 5805 ntTSL 5 BASIC4.05□□□□□ -1.76
COL6A3P12111 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL6A3P12111 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
COL6A3P12111 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL6A3P12111 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL6A3P12111 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.05□□□□□ -1.76
COL6A3P12111 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.05□□□□□ -1.76
COL6A3P12111 CKS1BP6-201ENST00000424932 240 ntBASIC4.05□□□□□ -1.76
COL6A3P12111 AC004938.1-201ENST00000438468 308 ntBASIC4.05□□□□□ -1.76
COL6A3P12111 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.05□□□□□ -1.76
COL6A3P12111 RHEBP2-201ENST00000450289 600 ntBASIC4.05□□□□□ -1.76
COL6A3P12111 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.05□□□□□ -1.76
COL6A3P12111 AC090337.1-201ENST00000579651 2074 ntBASIC4.05□□□□□ -1.76
COL6A3P12111 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.05□□□□□ -1.76
COL6A3P12111 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL6A3P12111 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL6A3P12111 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL6A3P12111 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
COL6A3P12111 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
COL6A3P12111 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL6A3P12111 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL6A3P12111 MR1-204ENST00000367580 7704 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL6A3P12111 AC009313.2-201ENST00000417893 1941 ntBASIC4.05□□□□□ -1.76
COL6A3P12111 SNORA70.6-201ENST00000383934 134 ntBASIC4.05□□□□□ -1.76
COL6A3P12111 BX890604.2-201ENST00000427883 474 ntBASIC4.05□□□□□ -1.76
COL6A3P12111 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.05□□□□□ -1.76
COL6A3P12111 RN7SL197P-201ENST00000466981 299 ntBASIC4.05□□□□□ -1.76
COL6A3P12111 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC4.05□□□□□ -1.76
COL6A3P12111 AC026784.1-201ENST00000507986 352 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms