Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXC4P09017 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC4P09017 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXC4P09017 AC012557.1-201ENST00000607115 611 ntBASIC4.23□□□□□ -1.73
HOXC4P09017 AC004241.3-201ENST00000611728 517 ntBASIC4.23□□□□□ -1.73
HOXC4P09017 AL353726.1-201ENST00000614041 1000 ntBASIC4.23□□□□□ -1.73
HOXC4P09017 AC005086.4-201ENST00000623065 213 ntBASIC4.23□□□□□ -1.73
HOXC4P09017 AC090506.2-201ENST00000624521 419 ntBASIC4.23□□□□□ -1.73
HOXC4P09017 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXC4P09017 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC4P09017 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
HOXC4P09017 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXC4P09017 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC4P09017 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC4P09017 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC4P09017 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.23□□□□□ -1.73
HOXC4P09017 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXC4P09017 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.23□□□□□ -1.73
HOXC4P09017 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXC4P09017 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXC4P09017 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXC4P09017 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXC4P09017 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXC4P09017 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXC4P09017 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
HOXC4P09017 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXC4P09017 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXC4P09017 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
HOXC4P09017 RNA5SP36-201ENST00000410197 133 ntBASIC4.22□□□□□ -1.73
HOXC4P09017 RN7SKP182-201ENST00000410772 298 ntBASIC4.22□□□□□ -1.73
HOXC4P09017 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC4P09017 AC013470.3-201ENST00000420252 1194 ntBASIC4.22□□□□□ -1.73
HOXC4P09017 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC4P09017 RFESDP1-201ENST00000422350 461 ntBASIC4.22□□□□□ -1.73
HOXC4P09017 IPMKP1-201ENST00000425988 855 ntBASIC4.22□□□□□ -1.73
HOXC4P09017 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.22□□□□□ -1.73
HOXC4P09017 RPEP2-201ENST00000432149 701 ntBASIC4.22□□□□□ -1.73
HOXC4P09017 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXC4P09017 FGF7P3-201ENST00000454645 303 ntBASIC4.22□□□□□ -1.73
HOXC4P09017 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC4P09017 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.22□□□□□ -1.73
HOXC4P09017 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC4P09017 AC012158.1-204ENST00000483430 465 ntBASIC4.22□□□□□ -1.73
HOXC4P09017 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXC4P09017 DEFB109F-201ENST00000491870 277 ntBASIC4.22□□□□□ -1.73
HOXC4P09017 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.22□□□□□ -1.73
HOXC4P09017 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC4P09017 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC4P09017 AC107918.3-201ENST00000533272 382 ntBASIC4.22□□□□□ -1.73
HOXC4P09017 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC4P09017 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC4P09017 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC4P09017 TVP23BP1-201ENST00000557500 617 ntBASIC4.22□□□□□ -1.73
HOXC4P09017 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC4P09017 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXC4P09017 AP005901.4-201ENST00000577336 569 ntBASIC4.22□□□□□ -1.73
HOXC4P09017 MIR3160-1-201ENST00000577972 85 ntBASIC4.22□□□□□ -1.73
HOXC4P09017 AC005034.4-201ENST00000603612 899 ntBASIC4.22□□□□□ -1.73
HOXC4P09017 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC4P09017 AL445363.3-201ENST00000623080 671 ntBASIC4.22□□□□□ -1.73
HOXC4P09017 AP003400.6-201ENST00000624698 740 ntBASIC4.22□□□□□ -1.73
HOXC4P09017 AC068724.3-201ENST00000625906 87 ntBASIC4.22□□□□□ -1.73
HOXC4P09017 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXC4P09017 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXC4P09017 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXC4P09017 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXC4P09017 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXC4P09017 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXC4P09017 AC139713.2-215ENST00000641428 5037 ntBASIC4.22□□□□□ -1.73
HOXC4P09017 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.21□□□□□ -1.73
HOXC4P09017 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.73
HOXC4P09017 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.73
HOXC4P09017 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
HOXC4P09017 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXC4P09017 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXC4P09017 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXC4P09017 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXC4P09017 AL121657.1-201ENST00000327215 531 ntBASIC4.21□□□□□ -1.74
HOXC4P09017 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXC4P09017 AC019155.1-201ENST00000382242 574 ntBASIC4.21□□□□□ -1.74
HOXC4P09017 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXC4P09017 AL583835.1-201ENST00000399570 407 ntBASIC4.21□□□□□ -1.74
HOXC4P09017 AL022722.2-201ENST00000402519 180 ntBASIC4.21□□□□□ -1.74
HOXC4P09017 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXC4P09017 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXC4P09017 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXC4P09017 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXC4P09017 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXC4P09017 RNA5SP246-201ENST00000458909 119 ntBASIC4.21□□□□□ -1.74
HOXC4P09017 RPS7P7-201ENST00000463499 571 ntBASIC4.21□□□□□ -1.74
HOXC4P09017 RPL7P22-201ENST00000466005 733 ntBASIC4.21□□□□□ -1.74
HOXC4P09017 UBA52P3-201ENST00000491303 382 ntBASIC4.21□□□□□ -1.74
HOXC4P09017 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
HOXC4P09017 RNA5SP519-201ENST00000516480 119 ntBASIC4.21□□□□□ -1.74
HOXC4P09017 MIR2116-201ENST00000517221 80 ntBASIC4.21□□□□□ -1.74
HOXC4P09017 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXC4P09017 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXC4P09017 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.21□□□□□ -1.74
HOXC4P09017 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXC4P09017 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms