Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 AC093770.1-201ENST00000511559 571 ntBASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 AC007016.1-201ENST00000512110 244 ntBASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 ATP5LP3-201ENST00000514223 304 ntBASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 AC067904.2-201ENST00000517322 1283 ntBASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 VTA1P2-201ENST00000520205 911 ntBASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 AC090819.1-201ENST00000523800 1111 ntBASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 AC068446.3-201ENST00000555285 382 ntBASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 MIR4644-201ENST00000579929 84 ntBASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 MIR432-201ENST00000606207 94 ntBASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 AP000864.1-201ENST00000609424 650 ntBASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 CR589904.2-201ENST00000612533 440 ntBASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 AC015722.2-201ENST00000622210 551 ntBASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 AC019080.5-201ENST00000624891 757 ntBASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 OR11H5P-202ENST00000641612 1325 ntBASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC28BQ9BUN5 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 Z73965.1-201ENST00000623412 2297 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AC010132.2-201ENST00000295493 1043 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 RNA5SP388-201ENST00000362584 119 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AC093719.1-202ENST00000392735 373 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 CHMP1B2P-201ENST00000399581 597 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 RPS26P47-201ENST00000427219 348 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AC245517.2-201ENST00000442890 346 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 TRY2P-201ENST00000448860 689 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 OR52J1P-201ENST00000450596 932 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AC012671.1-201ENST00000451912 203 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 SETP20-201ENST00000457046 852 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 RPL7P51-201ENST00000490532 749 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AC017037.1-201ENST00000508460 471 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AC019227.1-201ENST00000526902 510 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AP001804.2-201ENST00000533932 910 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AC091515.1-201ENST00000548110 679 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AL110118.1-201ENST00000553543 400 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AL160290.3-201ENST00000604869 165 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 Z98200.1-201ENST00000607298 470 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AC025016.1-201ENST00000616746 682 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AC067852.7-201ENST00000623270 535 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AC091905.4-201ENST00000623432 202 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 HSPD1P11-201ENST00000508643 1702 ntBASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
CCDC28BQ9BUN5 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.34□□□□□ -1.72
CCDC28BQ9BUN5 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
CCDC28BQ9BUN5 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.72
CCDC28BQ9BUN5 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC28BQ9BUN5 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
CCDC28BQ9BUN5 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC28BQ9BUN5 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC28BQ9BUN5 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC28BQ9BUN5 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
CCDC28BQ9BUN5 RN7SKP273-201ENST00000411392 314 ntBASIC4.33□□□□□ -1.72
CCDC28BQ9BUN5 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC28BQ9BUN5 AC099336.2-201ENST00000422457 254 ntBASIC4.33□□□□□ -1.72
CCDC28BQ9BUN5 UBE2V1P6-201ENST00000430840 422 ntBASIC4.33□□□□□ -1.72
CCDC28BQ9BUN5 RPS6P12-201ENST00000432491 726 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms