Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SCN11AQ9UI33 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.22□□□□□ -1.57
SCN11AQ9UI33 RNA5SP97-201ENST00000365006 84 ntBASIC5.22□□□□□ -1.57
SCN11AQ9UI33 AC026782.2-201ENST00000510845 636 ntBASIC5.22□□□□□ -1.57
SCN11AQ9UI33 SCARNA14-201ENST00000516903 136 ntBASIC5.22□□□□□ -1.57
SCN11AQ9UI33 AC087369.1-201ENST00000520775 996 ntBASIC5.22□□□□□ -1.57
SCN11AQ9UI33 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC5.22□□□□□ -1.57
SCN11AQ9UI33 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC5.22□□□□□ -1.57
SCN11AQ9UI33 AC063950.1-201ENST00000552036 308 ntBASIC5.22□□□□□ -1.57
SCN11AQ9UI33 AC007179.3-201ENST00000604976 235 ntBASIC5.22□□□□□ -1.57
SCN11AQ9UI33 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.22□□□□□ -1.57
SCN11AQ9UI33 SNORD91B-202ENST00000608459 222 ntBASIC5.22□□□□□ -1.57
SCN11AQ9UI33 AL354798.1-201ENST00000622505 329 ntBASIC5.22□□□□□ -1.57
SCN11AQ9UI33 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
SCN11AQ9UI33 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SCN11AQ9UI33 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
SCN11AQ9UI33 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SCN11AQ9UI33 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SCN11AQ9UI33 AC021242.1-201ENST00000507315 2035 ntBASIC5.22□□□□□ -1.57
SCN11AQ9UI33 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC5.22□□□□□ -1.57
SCN11AQ9UI33 AC233968.1-201ENST00000611212 1300 ntBASIC5.22□□□□□ -1.57
SCN11AQ9UI33 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SCN11AQ9UI33 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SCN11AQ9UI33 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.22□□□□□ -1.57
SCN11AQ9UI33 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC5.22□□□□□ -1.57
SCN11AQ9UI33 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SCN11AQ9UI33 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SCN11AQ9UI33 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC5.22□□□□□ -1.57
SCN11AQ9UI33 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SCN11AQ9UI33 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC5.21□□□□□ -1.57
SCN11AQ9UI33 MIR483-201ENST00000385070 76 ntBASIC5.21□□□□□ -1.57
SCN11AQ9UI33 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.57
SCN11AQ9UI33 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC5.21□□□□□ -1.57
SCN11AQ9UI33 RBMY1KP-201ENST00000423480 476 ntBASIC5.21□□□□□ -1.57
SCN11AQ9UI33 AL353748.1-201ENST00000440753 474 ntBASIC5.21□□□□□ -1.57
SCN11AQ9UI33 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.21□□□□□ -1.57
SCN11AQ9UI33 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.21□□□□□ -1.57
SCN11AQ9UI33 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC5.21□□□□□ -1.57
SCN11AQ9UI33 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.21□□□□□ -1.57
SCN11AQ9UI33 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC5.21□□□□□ -1.57
SCN11AQ9UI33 AC096577.2-201ENST00000611455 153 ntBASIC5.21□□□□□ -1.57
SCN11AQ9UI33 AC138907.10-201ENST00000623708 983 ntBASIC5.21□□□□□ -1.57
SCN11AQ9UI33 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
SCN11AQ9UI33 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.57
SCN11AQ9UI33 FAM91A3P-201ENST00000456826 2544 ntBASIC5.21□□□□□ -1.58
SCN11AQ9UI33 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SCN11AQ9UI33 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SCN11AQ9UI33 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
SCN11AQ9UI33 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
SCN11AQ9UI33 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
SCN11AQ9UI33 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
SCN11AQ9UI33 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SCN11AQ9UI33 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.21□□□□□ -1.58
SCN11AQ9UI33 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC5.21□□□□□ -1.58
SCN11AQ9UI33 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SCN11AQ9UI33 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
SCN11AQ9UI33 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC5.21□□□□□ -1.58
SCN11AQ9UI33 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC5.21□□□□□ -1.58
SCN11AQ9UI33 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SCN11AQ9UI33 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC5.21□□□□□ -1.58
SCN11AQ9UI33 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC5.21□□□□□ -1.58
SCN11AQ9UI33 RPS3AP12-201ENST00000443616 753 ntBASIC5.21□□□□□ -1.58
SCN11AQ9UI33 PPIAP15-201ENST00000479662 484 ntBASIC5.21□□□□□ -1.58
SCN11AQ9UI33 AC110768.1-201ENST00000509222 400 ntBASIC5.21□□□□□ -1.58
SCN11AQ9UI33 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC5.21□□□□□ -1.58
SCN11AQ9UI33 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SCN11AQ9UI33 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC5.21□□□□□ -1.58
SCN11AQ9UI33 Xist_exon4.1-201ENST00000615964 126 ntBASIC5.21□□□□□ -1.58
SCN11AQ9UI33 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SCN11AQ9UI33 AC004656.1-201ENST00000568479 4951 ntBASIC5.2□□□□□ -1.58
SCN11AQ9UI33 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SCN11AQ9UI33 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SCN11AQ9UI33 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SCN11AQ9UI33 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SCN11AQ9UI33 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SCN11AQ9UI33 VN1R8P-201ENST00000407739 893 ntBASIC5.2□□□□□ -1.58
SCN11AQ9UI33 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC5.2□□□□□ -1.58
SCN11AQ9UI33 RPS17P13-201ENST00000448974 407 ntBASIC5.2□□□□□ -1.58
SCN11AQ9UI33 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC5.2□□□□□ -1.58
SCN11AQ9UI33 AC025554.1-201ENST00000505641 188 ntBASIC5.2□□□□□ -1.58
SCN11AQ9UI33 IGKV2D-19-201ENST00000523346 262 ntBASIC5.2□□□□□ -1.58
SCN11AQ9UI33 AC022968.1-201ENST00000567372 442 ntBASIC5.2□□□□□ -1.58
SCN11AQ9UI33 AC112230.1-201ENST00000604342 547 ntBASIC5.2□□□□□ -1.58
SCN11AQ9UI33 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SCN11AQ9UI33 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SCN11AQ9UI33 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SCN11AQ9UI33 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SCN11AQ9UI33 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SCN11AQ9UI33 AC015908.5-201ENST00000623289 343 ntBASIC5.2□□□□□ -1.58
SCN11AQ9UI33 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.2□□□□□ -1.58
SCN11AQ9UI33 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SCN11AQ9UI33 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
SCN11AQ9UI33 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SCN11AQ9UI33 AP001642.1-201ENST00000624727 2117 ntBASIC5.2□□□□□ -1.58
SCN11AQ9UI33 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
SCN11AQ9UI33 AC006971.1-201ENST00000407916 4486 ntBASIC5.19□□□□□ -1.58
SCN11AQ9UI33 U1.1-201ENST00000384101 164 ntBASIC5.19□□□□□ -1.58
SCN11AQ9UI33 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC5.19□□□□□ -1.58
SCN11AQ9UI33 AC068533.1-201ENST00000418542 415 ntBASIC5.19□□□□□ -1.58
SCN11AQ9UI33 AC018644.1-201ENST00000429934 551 ntBASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms