Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RNA5SP383-201ENST00000362934 120 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AL583834.1-201ENST00000406943 343 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 RNA5SP107-201ENST00000411358 122 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AC245291.1-201ENST00000419501 328 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 RPS12P10-201ENST00000427031 377 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AL158071.1-201ENST00000430315 461 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 BX679664.1-201ENST00000434429 253 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 RPL23AP22-201ENST00000437556 453 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AC009969.1-201ENST00000438726 172 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AC108463.1-201ENST00000450258 347 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AC234781.3-201ENST00000452540 973 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 RPL31P11-202ENST00000454082 372 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 PTGES3P5-201ENST00000455109 434 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 RN7SL571P-201ENST00000468302 295 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 ACTG1P13-201ENST00000486987 1043 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 HLTF-AS1-201ENST00000492461 415 ntTSL 3 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 RPL36AP41-201ENST00000493820 306 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AC114967.1-201ENST00000504890 259 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 LINC01262-201ENST00000513681 879 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AC027369.2-201ENST00000528030 440 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AC027544.3-201ENST00000535082 757 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AC004024.1-201ENST00000549244 247 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 BICRA-AS1-201ENST00000598376 547 ntTSL 4 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AC090953.1-201ENST00000604305 1092 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AC067838.1-201ENST00000606064 577 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 SNORA51-201ENST00000606420 132 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 FAM27B-201ENST00000610601 213 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 PLCE1P1-201ENST00000622094 305 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AC048347.1-201ENST00000624621 427 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 AC118273.1-201ENST00000525324 3006 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 MAPK10-263ENST00000641052 4307 ntBASIC2.49□□□□□ -2.01
LINC00643Q86TS7 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC2.49□□□□□ -2.01
LINC00643Q86TS7 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 RNA5SP273-201ENST00000362484 113 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 RNU6-283P-201ENST00000364788 107 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 RNA5SP167-201ENST00000365461 116 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 AP002088.1-201ENST00000382740 395 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 MIR591-201ENST00000385290 95 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 AL136116.1-201ENST00000403591 381 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 AC126124.2-201ENST00000413542 321 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 NDUFB4P5-201ENST00000415445 361 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 AC110995.1-202ENST00000422914 860 ntTSL 3 BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 TNPO1P1-201ENST00000423641 1138 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 AC012498.1-201ENST00000424037 437 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 RPS21P1-201ENST00000434479 247 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 AC239800.1-201ENST00000442049 719 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 AC009244.1-201ENST00000450566 258 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 AL354710.1-201ENST00000453641 246 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 RPS5P7-201ENST00000456664 608 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 RPL36AP13-201ENST00000457490 317 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 ACA64.1-201ENST00000459171 127 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 MTCO1P30-201ENST00000515244 580 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 RNA5SP441-201ENST00000516809 88 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 AC022679.2-201ENST00000522186 813 ntTSL 2 BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 AC008489.1-201ENST00000524271 483 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 AL845552.1-201ENST00000556820 323 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 RN7SL652P-201ENST00000577769 300 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 MIR4506-201ENST00000584693 77 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 HCG18-243ENST00000602498 327 ntTSL 3 BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 AL390816.3-201ENST00000604527 1066 ntBASIC2.48□□□□□ -2.01
LINC00643Q86TS7 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC2.48□□□□□ -2.01
LINC00643Q86TS7 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms