Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
SOX3P41225 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SOX3P41225 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
SOX3P41225 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.35□□□□□ -1.71
SOX3P41225 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SOX3P41225 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SOX3P41225 RNU6-796P-201ENST00000391086 107 ntBASIC4.35□□□□□ -1.71
SOX3P41225 RN7SKP216-201ENST00000411050 312 ntBASIC4.35□□□□□ -1.71
SOX3P41225 AC069282.1-201ENST00000411911 526 ntBASIC4.35□□□□□ -1.71
SOX3P41225 BX664727.1-201ENST00000416024 466 ntBASIC4.35□□□□□ -1.71
SOX3P41225 ATG4AP1-201ENST00000416893 538 ntBASIC4.35□□□□□ -1.71
SOX3P41225 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC4.35□□□□□ -1.71
SOX3P41225 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC4.35□□□□□ -1.71
SOX3P41225 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.35□□□□□ -1.71
SOX3P41225 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.35□□□□□ -1.71
SOX3P41225 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.35□□□□□ -1.71
SOX3P41225 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
SOX3P41225 RPL7P55-201ENST00000450522 746 ntBASIC4.35□□□□□ -1.71
SOX3P41225 NDUFA12P1-201ENST00000455914 406 ntBASIC4.35□□□□□ -1.71
SOX3P41225 FCF1P6-201ENST00000456841 595 ntBASIC4.35□□□□□ -1.71
SOX3P41225 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC4.35□□□□□ -1.71
SOX3P41225 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC4.35□□□□□ -1.71
SOX3P41225 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.35□□□□□ -1.71
SOX3P41225 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC4.35□□□□□ -1.71
SOX3P41225 AC119751.4-201ENST00000507498 357 ntBASIC4.35□□□□□ -1.71
SOX3P41225 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.35□□□□□ -1.71
SOX3P41225 MTCO3P27-201ENST00000514397 196 ntBASIC4.35□□□□□ -1.71
SOX3P41225 RN7SKP141-201ENST00000516167 338 ntBASIC4.35□□□□□ -1.71
SOX3P41225 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC4.35□□□□□ -1.71
SOX3P41225 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
SOX3P41225 OR8X1P-201ENST00000534542 869 ntBASIC4.35□□□□□ -1.71
SOX3P41225 CD69-203ENST00000536709 1020 ntTSL 2 BASIC4.35□□□□□ -1.71
SOX3P41225 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC4.35□□□□□ -1.71
SOX3P41225 RPL21P7-201ENST00000557463 483 ntBASIC4.35□□□□□ -1.71
SOX3P41225 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.35□□□□□ -1.71
SOX3P41225 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.35□□□□□ -1.71
SOX3P41225 RN7SL652P-201ENST00000577769 300 ntBASIC4.35□□□□□ -1.71
SOX3P41225 RN7SL176P-201ENST00000580352 264 ntBASIC4.35□□□□□ -1.71
SOX3P41225 RN7SL690P-201ENST00000582087 240 ntBASIC4.35□□□□□ -1.71
SOX3P41225 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC4.35□□□□□ -1.71
SOX3P41225 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC4.35□□□□□ -1.71
SOX3P41225 AC234771.5-201ENST00000600161 514 ntBASIC4.35□□□□□ -1.71
SOX3P41225 AP003117.1-201ENST00000602771 554 ntBASIC4.35□□□□□ -1.71
SOX3P41225 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.35□□□□□ -1.71
SOX3P41225 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.35□□□□□ -1.71
SOX3P41225 AC026741.1-201ENST00000605892 482 ntBASIC4.35□□□□□ -1.71
SOX3P41225 AL121890.2-201ENST00000617644 465 ntBASIC4.35□□□□□ -1.71
SOX3P41225 AC074140.1-201ENST00000621617 208 ntBASIC4.35□□□□□ -1.71
SOX3P41225 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC4.35□□□□□ -1.71
SOX3P41225 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.35□□□□□ -1.71
SOX3P41225 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SOX3P41225 VPS35P1-201ENST00000563400 1518 ntBASIC4.35□□□□□ -1.71
SOX3P41225 Z95327.2-201ENST00000414579 1873 ntBASIC4.35□□□□□ -1.71
SOX3P41225 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SOX3P41225 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SOX3P41225 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.34□□□□□ -1.71
SOX3P41225 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SOX3P41225 AL136164.3-201ENST00000624429 3978 ntBASIC4.34□□□□□ -1.71
SOX3P41225 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SOX3P41225 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SOX3P41225 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SOX3P41225 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SOX3P41225 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SOX3P41225 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SOX3P41225 RNU6-1257P-201ENST00000384625 110 ntBASIC4.34□□□□□ -1.71
SOX3P41225 HDGFP1-201ENST00000405943 252 ntBASIC4.34□□□□□ -1.71
SOX3P41225 AL080315.1-201ENST00000406055 466 ntBASIC4.34□□□□□ -1.71
SOX3P41225 AL136131.1-201ENST00000406079 803 ntBASIC4.34□□□□□ -1.71
SOX3P41225 AL034374.1-201ENST00000406329 351 ntBASIC4.34□□□□□ -1.71
SOX3P41225 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.34□□□□□ -1.71
SOX3P41225 AC010385.1-201ENST00000412374 256 ntBASIC4.34□□□□□ -1.71
SOX3P41225 AC009237.10-201ENST00000414112 510 ntBASIC4.34□□□□□ -1.71
SOX3P41225 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SOX3P41225 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.34□□□□□ -1.71
SOX3P41225 AL096829.2-201ENST00000446582 742 ntBASIC4.34□□□□□ -1.71
SOX3P41225 AL591623.2-201ENST00000449978 222 ntBASIC4.34□□□□□ -1.71
SOX3P41225 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.34□□□□□ -1.71
SOX3P41225 CEACAMP6-201ENST00000452007 574 ntBASIC4.34□□□□□ -1.71
SOX3P41225 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.34□□□□□ -1.71
SOX3P41225 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.34□□□□□ -1.71
SOX3P41225 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
SOX3P41225 ATP5G1P3-201ENST00000463301 410 ntBASIC4.34□□□□□ -1.71
SOX3P41225 AC008379.1-201ENST00000463655 464 ntBASIC4.34□□□□□ -1.71
SOX3P41225 RN7SL817P-201ENST00000480777 288 ntBASIC4.34□□□□□ -1.71
SOX3P41225 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.34□□□□□ -1.71
SOX3P41225 OR5H3P-201ENST00000502817 919 ntBASIC4.34□□□□□ -1.71
SOX3P41225 HAUS1P1-201ENST00000505275 832 ntBASIC4.34□□□□□ -1.71
SOX3P41225 NAMPTP2-201ENST00000505629 1115 ntBASIC4.34□□□□□ -1.71
SOX3P41225 AC093720.1-201ENST00000505681 714 ntBASIC4.34□□□□□ -1.71
SOX3P41225 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC4.34□□□□□ -1.71
SOX3P41225 AC010374.2-201ENST00000512933 535 ntBASIC4.34□□□□□ -1.71
SOX3P41225 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.34□□□□□ -1.71
SOX3P41225 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.34□□□□□ -1.71
SOX3P41225 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.34□□□□□ -1.71
SOX3P41225 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.34□□□□□ -1.71
SOX3P41225 FKBP1BP1-201ENST00000553366 325 ntBASIC4.34□□□□□ -1.71
SOX3P41225 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC4.34□□□□□ -1.71
SOX3P41225 AC124283.4-201ENST00000581815 456 ntBASIC4.34□□□□□ -1.71
SOX3P41225 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.34□□□□□ -1.71
SOX3P41225 COX6CP4-201ENST00000605798 228 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms