Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
COL6A1P12109 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC6.09□□□□□ -1.43
COL6A1P12109 AC074050.1-201ENST00000563247 211 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC6.09□□□□□ -1.43
COL6A1P12109 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC6.09□□□□□ -1.43
COL6A1P12109 AC067959.1-201ENST00000604334 379 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 AC010738.1-201ENST00000604970 987 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 AP001596.2-201ENST00000608410 312 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 AC092794.1-201ENST00000612734 582 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC6.09□□□□□ -1.43
COL6A1P12109 AC019226.1-201ENST00000625666 515 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC6.09□□□□□ -1.43
COL6A1P12109 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC6.09□□□□□ -1.43
COL6A1P12109 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A1P12109 STX3-208ENST00000641815 3236 ntBASIC6.09□□□□□ -1.43
COL6A1P12109 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
COL6A1P12109 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC6.09□□□□□ -1.43
COL6A1P12109 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
COL6A1P12109 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC6.09□□□□□ -1.44
COL6A1P12109 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC6.09□□□□□ -1.44
COL6A1P12109 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.44
COL6A1P12109 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC6.09□□□□□ -1.44
COL6A1P12109 AP000756.2-201ENST00000624168 2567 ntBASIC6.09□□□□□ -1.44
COL6A1P12109 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
COL6A1P12109 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC6.08□□□□□ -1.44
COL6A1P12109 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
COL6A1P12109 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A1P12109 CASC19-221ENST00000641309 1382 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A1P12109 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A1P12109 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
COL6A1P12109 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A1P12109 AL731532.1-201ENST00000623972 4236 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 NACA3P-201ENST00000359690 648 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A1P12109 RNU4-31P-201ENST00000384211 141 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 DNAJC19P6-201ENST00000401853 280 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 RPS4XP9-201ENST00000405151 780 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 RN7SKP126-201ENST00000411143 300 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC6.08□□□□□ -1.44
COL6A1P12109 AC006960.1-201ENST00000419980 153 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 AC048351.1-201ENST00000420064 602 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC6.08□□□□□ -1.44
COL6A1P12109 YWHAZP7-201ENST00000436906 631 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC6.08□□□□□ -1.44
COL6A1P12109 NDUFAF4P4-201ENST00000454883 502 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC6.08□□□□□ -1.44
COL6A1P12109 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC6.08□□□□□ -1.44
COL6A1P12109 RN7SL459P-201ENST00000481078 302 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 PDCL3P4-201ENST00000489621 720 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 HPRT1P2-201ENST00000505250 544 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 AC008885.2-201ENST00000509506 930 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC6.08□□□□□ -1.44
COL6A1P12109 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC6.08□□□□□ -1.44
COL6A1P12109 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC6.08□□□□□ -1.44
COL6A1P12109 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC6.08□□□□□ -1.44
COL6A1P12109 RNU2-30P-201ENST00000516209 141 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A1P12109 MTCYBP41-201ENST00000528913 1123 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC6.08□□□□□ -1.44
COL6A1P12109 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC6.08□□□□□ -1.44
COL6A1P12109 NBEAP1-201ENST00000554452 979 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC6.08□□□□□ -1.44
COL6A1P12109 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC6.08□□□□□ -1.44
COL6A1P12109 AL031281.1-201ENST00000604049 488 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC6.08□□□□□ -1.44
COL6A1P12109 AL158063.1-201ENST00000615349 536 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 AC015540.1-201ENST00000615828 501 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 U6.42-201ENST00000618440 107 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A1P12109 AF246928.1-201ENST00000623768 87 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 AL603839.4-201ENST00000624658 1005 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 AL356121.2-201ENST00000624715 780 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC6.08□□□□□ -1.44
COL6A1P12109 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
COL6A1P12109 AC073869.10-201ENST00000642016 354 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A1P12109 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
COL6A1P12109 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A1P12109 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC6.08□□□□□ -1.44
COL6A1P12109 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC6.08□□□□□ -1.44
COL6A1P12109 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC6.08□□□□□ -1.44
COL6A1P12109 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A1P12109 AC006042.3-201ENST00000454684 1469 ntBASIC6.08□□□□□ -1.44
COL6A1P12109 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL6A1P12109 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
COL6A1P12109 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
COL6A1P12109 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC6.08□□□□□ -1.44
COL6A1P12109 HSPD1P8-201ENST00000400121 1658 ntBASIC6.07□□□□□ -1.44
COL6A1P12109 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL6A1P12109 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC6.07□□□□□ -1.44
COL6A1P12109 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC6.07□□□□□ -1.44
COL6A1P12109 SOCS5P3-201ENST00000425115 1576 ntBASIC6.07□□□□□ -1.44
COL6A1P12109 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC6.07□□□□□ -1.44
COL6A1P12109 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
COL6A1P12109 RNU6-517P-201ENST00000384362 110 ntBASIC6.07□□□□□ -1.44
COL6A1P12109 AL009179.1-201ENST00000406085 265 ntBASIC6.07□□□□□ -1.44
COL6A1P12109 GNG5P5-201ENST00000420444 220 ntBASIC6.07□□□□□ -1.44
COL6A1P12109 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC6.07□□□□□ -1.44
COL6A1P12109 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms