Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXC9P31274 RNA5SP513-201ENST00000364648 118 ntBASIC5.7□□□□□ -1.5
HOXC9P31274 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.7□□□□□ -1.5
HOXC9P31274 AL512504.1-201ENST00000415494 778 ntBASIC5.7□□□□□ -1.5
HOXC9P31274 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.7□□□□□ -1.5
HOXC9P31274 BMS1P19-201ENST00000433925 393 ntBASIC5.7□□□□□ -1.5
HOXC9P31274 MTND4P15-201ENST00000437913 1033 ntBASIC5.7□□□□□ -1.5
HOXC9P31274 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
HOXC9P31274 AL691517.1-201ENST00000440833 1235 ntBASIC5.7□□□□□ -1.5
HOXC9P31274 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC5.7□□□□□ -1.5
HOXC9P31274 RPS4XP18-201ENST00000495480 763 ntBASIC5.7□□□□□ -1.5
HOXC9P31274 AC117525.1-201ENST00000515228 503 ntBASIC5.7□□□□□ -1.5
HOXC9P31274 OR8K2P-201ENST00000524645 927 ntBASIC5.7□□□□□ -1.5
HOXC9P31274 OR7E10P-201ENST00000526420 991 ntBASIC5.7□□□□□ -1.5
HOXC9P31274 DYNLL1P4-201ENST00000549314 266 ntBASIC5.7□□□□□ -1.5
HOXC9P31274 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC5.7□□□□□ -1.5
HOXC9P31274 AGGF1P6-201ENST00000569213 976 ntBASIC5.7□□□□□ -1.5
HOXC9P31274 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC5.7□□□□□ -1.5
HOXC9P31274 AC005034.4-201ENST00000603612 899 ntBASIC5.7□□□□□ -1.5
HOXC9P31274 AC005972.3-201ENST00000606304 481 ntBASIC5.7□□□□□ -1.5
HOXC9P31274 MIR92B-201ENST00000607575 96 ntBASIC5.7□□□□□ -1.5
HOXC9P31274 AC234782.5-201ENST00000617723 324 ntBASIC5.7□□□□□ -1.5
HOXC9P31274 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC5.7□□□□□ -1.5
HOXC9P31274 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.7□□□□□ -1.5
HOXC9P31274 CDRT1-208ENST00000630868 794 ntBASIC5.7□□□□□ -1.5
HOXC9P31274 AC119674.1-220ENST00000641502 1048 ntBASIC5.7□□□□□ -1.5
HOXC9P31274 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HOXC9P31274 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.7□□□□□ -1.5
HOXC9P31274 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXC9P31274 NOL8P1-201ENST00000508336 3529 ntBASIC5.7□□□□□ -1.5
HOXC9P31274 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
HOXC9P31274 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
HOXC9P31274 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HOXC9P31274 AC006971.1-201ENST00000407916 4486 ntBASIC5.69□□□□□ -1.5
HOXC9P31274 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.69□□□□□ -1.5
HOXC9P31274 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXC9P31274 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.69□□□□□ -1.5
HOXC9P31274 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
HOXC9P31274 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC5.69□□□□□ -1.5
HOXC9P31274 RNU11-4P-201ENST00000391149 133 ntBASIC5.69□□□□□ -1.5
HOXC9P31274 ENSAP1-201ENST00000392855 326 ntBASIC5.69□□□□□ -1.5
HOXC9P31274 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC5.69□□□□□ -1.5
HOXC9P31274 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC5.69□□□□□ -1.5
HOXC9P31274 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HOXC9P31274 RPL23AP25-201ENST00000430973 463 ntBASIC5.69□□□□□ -1.5
HOXC9P31274 MTND4LP7-201ENST00000431728 294 ntBASIC5.69□□□□□ -1.5
HOXC9P31274 RPS26P2-201ENST00000440331 348 ntBASIC5.69□□□□□ -1.5
HOXC9P31274 RNA5SP246-201ENST00000458909 119 ntBASIC5.69□□□□□ -1.5
HOXC9P31274 VN1R105P-201ENST00000486595 910 ntBASIC5.69□□□□□ -1.5
HOXC9P31274 FTH1P21-201ENST00000512179 511 ntBASIC5.69□□□□□ -1.5
HOXC9P31274 RNU6-760P-201ENST00000516078 97 ntBASIC5.69□□□□□ -1.5
HOXC9P31274 SNORA67.7-201ENST00000516664 135 ntBASIC5.69□□□□□ -1.5
HOXC9P31274 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC5.69□□□□□ -1.5
HOXC9P31274 MTCO1P49-201ENST00000523429 802 ntBASIC5.69□□□□□ -1.5
HOXC9P31274 AC027281.1-201ENST00000574178 758 ntBASIC5.69□□□□□ -1.5
HOXC9P31274 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC5.69□□□□□ -1.5
HOXC9P31274 AC007423.1-201ENST00000605009 627 ntBASIC5.69□□□□□ -1.5
HOXC9P31274 AC092574.1-201ENST00000609771 420 ntBASIC5.69□□□□□ -1.5
HOXC9P31274 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HOXC9P31274 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.69□□□□□ -1.5
HOXC9P31274 AL672167.1-205ENST00000641112 3080 ntBASIC5.69□□□□□ -1.5
HOXC9P31274 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
HOXC9P31274 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HOXC9P31274 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.69□□□□□ -1.5
HOXC9P31274 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HOXC9P31274 MTND4P21-201ENST00000453886 1357 ntBASIC5.68□□□□□ -1.5
HOXC9P31274 GHR-202ENST00000357703 4316 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXC9P31274 GHR-213ENST00000622294 4312 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXC9P31274 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXC9P31274 HSPD1P14-201ENST00000432666 1618 ntBASIC5.68□□□□□ -1.5
HOXC9P31274 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HOXC9P31274 RNU1-85P-201ENST00000364127 164 ntBASIC5.68□□□□□ -1.5
HOXC9P31274 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXC9P31274 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC5.68□□□□□ -1.5
HOXC9P31274 RN7SKP167-201ENST00000411047 285 ntBASIC5.68□□□□□ -1.5
HOXC9P31274 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC5.68□□□□□ -1.5
HOXC9P31274 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXC9P31274 CBX1P3-201ENST00000413296 527 ntBASIC5.68□□□□□ -1.5
HOXC9P31274 AL445528.1-201ENST00000426330 420 ntBASIC5.68□□□□□ -1.5
HOXC9P31274 FAR1P1-201ENST00000427163 934 ntBASIC5.68□□□□□ -1.5
HOXC9P31274 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXC9P31274 RPS15AP29-201ENST00000445539 400 ntBASIC5.68□□□□□ -1.5
HOXC9P31274 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXC9P31274 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXC9P31274 SEC11B-201ENST00000518383 499 ntBASIC5.68□□□□□ -1.5
HOXC9P31274 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC5.68□□□□□ -1.5
HOXC9P31274 MIR4286-201ENST00000580651 93 ntBASIC5.68□□□□□ -1.5
HOXC9P31274 AC053481.4-201ENST00000583164 216 ntBASIC5.68□□□□□ -1.5
HOXC9P31274 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC5.68□□□□□ -1.5
HOXC9P31274 AL133445.2-201ENST00000611191 527 ntBASIC5.68□□□□□ -1.5
HOXC9P31274 MIR7151-201ENST00000617477 60 ntBASIC5.68□□□□□ -1.5
HOXC9P31274 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXC9P31274 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC5.68□□□□□ -1.5
HOXC9P31274 OR8B1P-202ENST00000641132 1178 ntBASIC5.68□□□□□ -1.5
HOXC9P31274 NCOA4P2-201ENST00000340589 1813 ntBASIC5.68□□□□□ -1.5
HOXC9P31274 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC5.68□□□□□ -1.5
HOXC9P31274 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HOXC9P31274 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
HOXC9P31274 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
HOXC9P31274 AL672167.1-203ENST00000641299 2975 ntBASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms