Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Vps28Q9D1C8 Gm42918-201ENSMUST00000199249 1580 ntBASIC17.06■□□□□ 0.32
Vps28Q9D1C8 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps28Q9D1C8 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps28Q9D1C8 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC17.06■□□□□ 0.32
Vps28Q9D1C8 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Vps28Q9D1C8 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps28Q9D1C8 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps28Q9D1C8 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Vps28Q9D1C8 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Vps28Q9D1C8 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Vps28Q9D1C8 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Vps28Q9D1C8 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps28Q9D1C8 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Vps28Q9D1C8 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Vps28Q9D1C8 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
Vps28Q9D1C8 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps28Q9D1C8 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps28Q9D1C8 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps28Q9D1C8 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Vps28Q9D1C8 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Vps28Q9D1C8 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Vps28Q9D1C8 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Vps28Q9D1C8 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Vps28Q9D1C8 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Vps28Q9D1C8 Wnt10b-204ENSMUST00000226655 1807 ntBASIC17.05■□□□□ 0.32
Vps28Q9D1C8 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Vps28Q9D1C8 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Vps28Q9D1C8 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Vps28Q9D1C8 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
Vps28Q9D1C8 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC17.05■□□□□ 0.32
Vps28Q9D1C8 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Vps28Q9D1C8 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC17.05■□□□□ 0.32
Vps28Q9D1C8 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Vps28Q9D1C8 AC122351.1-201ENSMUST00000220467 126 ntBASIC17.05■□□□□ 0.32
Vps28Q9D1C8 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Vps28Q9D1C8 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC17.05■□□□□ 0.32
Vps28Q9D1C8 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Vps28Q9D1C8 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Vps28Q9D1C8 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Vps28Q9D1C8 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Vps28Q9D1C8 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Vps28Q9D1C8 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Vps28Q9D1C8 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps28Q9D1C8 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps28Q9D1C8 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps28Q9D1C8 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps28Q9D1C8 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Vps28Q9D1C8 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC17.04■□□□□ 0.32
Vps28Q9D1C8 Gm13186-201ENSMUST00000118031 316 ntBASIC17.04■□□□□ 0.32
Vps28Q9D1C8 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Vps28Q9D1C8 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps28Q9D1C8 Gm37722-201ENSMUST00000193757 208 ntBASIC17.04■□□□□ 0.32
Vps28Q9D1C8 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Vps28Q9D1C8 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps28Q9D1C8 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Vps28Q9D1C8 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps28Q9D1C8 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps28Q9D1C8 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps28Q9D1C8 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Vps28Q9D1C8 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps28Q9D1C8 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps28Q9D1C8 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps28Q9D1C8 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Vps28Q9D1C8 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps28Q9D1C8 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Vps28Q9D1C8 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps28Q9D1C8 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps28Q9D1C8 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps28Q9D1C8 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Vps28Q9D1C8 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps28Q9D1C8 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps28Q9D1C8 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Vps28Q9D1C8 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps28Q9D1C8 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Vps28Q9D1C8 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps28Q9D1C8 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Vps28Q9D1C8 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps28Q9D1C8 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps28Q9D1C8 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps28Q9D1C8 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Vps28Q9D1C8 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Vps28Q9D1C8 Gm6190-201ENSMUST00000220683 1374 ntBASIC17.02■□□□□ 0.32
Vps28Q9D1C8 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Vps28Q9D1C8 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC17.02■□□□□ 0.32
Vps28Q9D1C8 Phf7-203ENSMUST00000226565 1971 ntBASIC17.02■□□□□ 0.32
Vps28Q9D1C8 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Vps28Q9D1C8 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC17.02■□□□□ 0.32
Vps28Q9D1C8 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Vps28Q9D1C8 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Vps28Q9D1C8 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
Vps28Q9D1C8 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC17.02■□□□□ 0.32
Vps28Q9D1C8 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC17.02■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 63.3 ms