Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ddx56Q9D0R4 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Gm6433-201ENSMUST00000118634 875 ntBASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Ddx56Q9D0R4 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Ddx56Q9D0R4 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
Ddx56Q9D0R4 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Ddx56Q9D0R4 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
Ddx56Q9D0R4 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Ddx56Q9D0R4 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Ddx56Q9D0R4 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC17.44■□□□□ 0.38
Ddx56Q9D0R4 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Ddx56Q9D0R4 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms