Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Gm18115-201ENSMUST00000221209 621 ntBASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Gm45774-201ENSMUST00000211992 2665 ntBASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3bQ3ULL6 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3bQ3ULL6 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3bQ3ULL6 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3bQ3ULL6 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3bQ3ULL6 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3bQ3ULL6 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3bQ3ULL6 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3bQ3ULL6 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Upf3bQ3ULL6 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3bQ3ULL6 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3bQ3ULL6 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Upf3bQ3ULL6 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3bQ3ULL6 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Upf3bQ3ULL6 Ddx41-204ENSMUST00000224765 2199 ntBASIC17.79■□□□□ 0.44
Upf3bQ3ULL6 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3bQ3ULL6 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3bQ3ULL6 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3bQ3ULL6 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Upf3bQ3ULL6 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Upf3bQ3ULL6 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3bQ3ULL6 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3bQ3ULL6 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3bQ3ULL6 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3bQ3ULL6 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3bQ3ULL6 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
Upf3bQ3ULL6 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3bQ3ULL6 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3bQ3ULL6 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3bQ3ULL6 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3bQ3ULL6 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3bQ3ULL6 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3bQ3ULL6 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3bQ3ULL6 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Upf3bQ3ULL6 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3bQ3ULL6 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3bQ3ULL6 Gm11336-201ENSMUST00000118168 334 ntBASIC17.77■□□□□ 0.44
Upf3bQ3ULL6 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3bQ3ULL6 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3bQ3ULL6 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Upf3bQ3ULL6 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Upf3bQ3ULL6 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Upf3bQ3ULL6 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Upf3bQ3ULL6 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Upf3bQ3ULL6 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Upf3bQ3ULL6 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Cxcl14-202ENSMUST00000224801 1467 ntBASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Upf3bQ3ULL6 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC17.76■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 66.1 ms