Protein–RNA interactions for Protein: P40645

Sox6, Transcription factor SOX-6, mousemouse

Predictions only

Length 827 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox6P40645 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Sox6P40645 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Sox6P40645 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Sox6P40645 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Sox6P40645 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
Sox6P40645 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Sox6P40645 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC15.64■□□□□ 0.09
Sox6P40645 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Sox6P40645 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC15.64■□□□□ 0.09
Sox6P40645 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC15.64■□□□□ 0.09
Sox6P40645 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Sox6P40645 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Sox6P40645 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Sox6P40645 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Sox6P40645 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Sox6P40645 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Sox6P40645 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Sox6P40645 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Sox6P40645 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Sox6P40645 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Sox6P40645 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
Sox6P40645 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Sox6P40645 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC15.63■□□□□ 0.09
Sox6P40645 Gm10517-202ENSMUST00000192970 758 ntBASIC15.63■□□□□ 0.09
Sox6P40645 Gm4974-201ENSMUST00000209974 875 ntBASIC15.63■□□□□ 0.09
Sox6P40645 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Sox6P40645 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Sox6P40645 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Sox6P40645 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Sox6P40645 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC15.63■□□□□ 0.09
Sox6P40645 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Sox6P40645 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC15.63■□□□□ 0.09
Sox6P40645 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Sox6P40645 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Sox6P40645 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Sox6P40645 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Sox6P40645 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Sox6P40645 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Gm11841-201ENSMUST00000117060 1963 ntBASIC15.62■□□□□ 0.09
Sox6P40645 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC15.62■□□□□ 0.09
Sox6P40645 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
Sox6P40645 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Sox6P40645 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Sox6P40645 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
Sox6P40645 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Sox6P40645 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Sox6P40645 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC15.61■□□□□ 0.09
Sox6P40645 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Sox6P40645 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC15.61■□□□□ 0.09
Sox6P40645 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Sox6P40645 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Sox6P40645 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Sox6P40645 Gm13181-201ENSMUST00000120117 1069 ntBASIC15.61■□□□□ 0.09
Sox6P40645 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC15.61■□□□□ 0.09
Sox6P40645 Gm9694-201ENSMUST00000193347 1189 ntBASIC15.61■□□□□ 0.09
Sox6P40645 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Sox6P40645 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Sox6P40645 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
Sox6P40645 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Sox6P40645 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Sox6P40645 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Sox6P40645 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Sox6P40645 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Sox6P40645 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Sox6P40645 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
Sox6P40645 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Sox6P40645 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Sox6P40645 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC15.61■□□□□ 0.09
Sox6P40645 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Sox6P40645 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Sox6P40645 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
Sox6P40645 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Sox6P40645 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Sox6P40645 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Sox6P40645 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Sox6P40645 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Sox6P40645 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Sox6P40645 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Sox6P40645 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC15.6■□□□□ 0.09
Sox6P40645 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms