Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Pcdhgb8A0A140LI48 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Pcdhgb8A0A140LI48 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Pcdhgb8A0A140LI48 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Pcdhgb8A0A140LI48 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Pcdhgb8A0A140LI48 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Pcdhgb8A0A140LI48 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Pcdhgb8A0A140LI48 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Pcdhgb8A0A140LI48 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC15.06■□□□□ 0
Pcdhgb8A0A140LI48 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Pcdhgb8A0A140LI48 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Pcdhgb8A0A140LI48 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Pcdhgb8A0A140LI48 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Pcdhgb8A0A140LI48 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Pcdhgb8A0A140LI48 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
Pcdhgb8A0A140LI48 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Pcdhgb8A0A140LI48 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC15.05■□□□□ -0
Pcdhgb8A0A140LI48 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdhgb8A0A140LI48 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
Pcdhgb8A0A140LI48 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC15.03■□□□□ -0
Pcdhgb8A0A140LI48 Gm10654-201ENSMUST00000098653 1633 ntBASIC15.03■□□□□ -0
Pcdhgb8A0A140LI48 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC15.03■□□□□ -0
Pcdhgb8A0A140LI48 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Pcdhgb8A0A140LI48 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Pcdhgb8A0A140LI48 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC15.03■□□□□ -0
Pcdhgb8A0A140LI48 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Pcdhgb8A0A140LI48 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Pcdhgb8A0A140LI48 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC15.03■□□□□ -0
Pcdhgb8A0A140LI48 Timm23-208ENSMUST00000226683 750 ntBASIC15.03■□□□□ -0
Pcdhgb8A0A140LI48 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Pcdhgb8A0A140LI48 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Pcdhgb8A0A140LI48 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC15.03■□□□□ -0
Pcdhgb8A0A140LI48 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC15.03■□□□□ -0
Pcdhgb8A0A140LI48 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Pcdhgb8A0A140LI48 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Pcdhgb8A0A140LI48 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Pcdhgb8A0A140LI48 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Pcdhgb8A0A140LI48 Gm8839-201ENSMUST00000121279 1645 ntBASIC15.03■□□□□ -0
Pcdhgb8A0A140LI48 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Pcdhgb8A0A140LI48 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
Pcdhgb8A0A140LI48 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC15.02■□□□□ -0
Pcdhgb8A0A140LI48 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC15.02■□□□□ -0
Pcdhgb8A0A140LI48 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Pcdhgb8A0A140LI48 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms