Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 Y_RNA.192-201ENST00000363977 102 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 RNU4-12P-201ENST00000365233 139 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 SNORA51.9-201ENST00000384295 124 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 SNORA40.2-201ENST00000390847 128 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 RPL23AP59-201ENST00000399415 461 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 TPMTP3-201ENST00000411928 735 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 Z99497.1-201ENST00000421282 135 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 REREP1Y-201ENST00000422655 198 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 FABP7P1-201ENST00000424004 391 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 CRIP1P1-201ENST00000427567 185 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 REREP2Y-201ENST00000439103 200 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 DNAJC19P4-201ENST00000440115 345 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 MTND3P1-201ENST00000441336 220 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 TRIM60P18-201ENST00000441518 828 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 RPL31P20-201ENST00000449593 360 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 AC116337.2-201ENST00000477662 156 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 RPL7P42-201ENST00000481005 679 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 TCP11X3P-202ENST00000514289 1254 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 HSD3BP3-201ENST00000514706 994 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 RNU6-314P-201ENST00000516574 104 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 RN7SKP35-201ENST00000517210 151 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 AP001207.1-201ENST00000524051 481 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 AC008507.1-201ENST00000587506 734 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 YWHAQP7-201ENST00000603536 658 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 AC092266.1-201ENST00000610958 165 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 AL589743.7-201ENST00000612637 233 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 AL021918.2-201ENST00000613415 194 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 AC127502.3-201ENST00000636170 1206 ntBASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 RMST-209ENST00000639542 3269 ntTSL 5 BASIC6.67□□□□□ -1.34
CCDC39Q9UFE4 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AC010266.2-201ENST00000564741 3255 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 ODF3-202ENST00000342593 386 ntTSL 5 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 MIR181A1-201ENST00000385026 110 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 RPS20P15-201ENST00000412792 311 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 DPPA2P2-201ENST00000418220 897 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 CYCSP46-201ENST00000423569 204 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 OR8F1P-201ENST00000425243 930 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 RPS4XP16-201ENST00000427198 791 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 MTATP6P30-201ENST00000443540 664 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 BMS1P10-201ENST00000443754 1120 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 PAXBP1P1-201ENST00000449315 447 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 CBX1P2-201ENST00000453841 458 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 RNU1-88P-201ENST00000459274 128 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 KLF3P2-201ENST00000465138 268 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 RN7SL269P-201ENST00000467795 305 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AC122718.2-201ENST00000505325 591 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 STMN1P2-201ENST00000508435 439 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AC113347.3-201ENST00000509113 148 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 RNU6-678P-201ENST00000516832 109 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AC090424.1-201ENST00000535243 736 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AL049830.4-201ENST00000555149 351 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 OR11J2P-201ENST00000555298 907 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AL845552.1-201ENST00000556820 323 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AC116158.1-201ENST00000560231 2129 ntBASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC6.66□□□□□ -1.34
CCDC39Q9UFE4 AP005119.1-201ENST00000580956 292 ntBASIC6.66□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 119.1 ms