Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 AL137100.1-201ENST00000556703 1620 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 AC012618.3-205ENST00000637896 1496 ntBASIC4.31□□□□□ -1.72
TREX1Q9NSU2 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 AC233968.1-201ENST00000611212 1300 ntBASIC4.31□□□□□ -1.72
TREX1Q9NSU2 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 RNU1-94P-201ENST00000362627 173 ntBASIC4.31□□□□□ -1.72
TREX1Q9NSU2 RNA5SP175-201ENST00000364275 119 ntBASIC4.31□□□□□ -1.72
TREX1Q9NSU2 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 GAPDHP49-201ENST00000421421 961 ntBASIC4.31□□□□□ -1.72
TREX1Q9NSU2 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 RPL23AP52-201ENST00000439311 478 ntBASIC4.31□□□□□ -1.72
TREX1Q9NSU2 RN7SL98P-201ENST00000462271 300 ntBASIC4.31□□□□□ -1.72
TREX1Q9NSU2 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 AC006499.6-201ENST00000511169 607 ntBASIC4.31□□□□□ -1.72
TREX1Q9NSU2 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.31□□□□□ -1.72
TREX1Q9NSU2 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 CYP4A43P-201ENST00000568156 121 ntBASIC4.31□□□□□ -1.72
TREX1Q9NSU2 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 MIR432-201ENST00000606207 94 ntBASIC4.31□□□□□ -1.72
TREX1Q9NSU2 SNORA35B-201ENST00000607417 129 ntBASIC4.31□□□□□ -1.72
TREX1Q9NSU2 MIR6730-201ENST00000622213 67 ntBASIC4.31□□□□□ -1.72
TREX1Q9NSU2 AC008013.2-202ENST00000637965 364 ntBASIC4.31□□□□□ -1.72
TREX1Q9NSU2 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.31□□□□□ -1.72
TREX1Q9NSU2 AL356489.2-201ENST00000566968 3528 ntBASIC4.3□□□□□ -1.72
TREX1Q9NSU2 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 EIF2AP4-201ENST00000424793 1781 ntBASIC4.3□□□□□ -1.72
TREX1Q9NSU2 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 MIR192-201ENST00000384915 110 ntBASIC4.3□□□□□ -1.72
TREX1Q9NSU2 RNA5SP105-201ENST00000391123 113 ntBASIC4.3□□□□□ -1.72
TREX1Q9NSU2 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 EIF1P3-201ENST00000423841 334 ntBASIC4.3□□□□□ -1.72
TREX1Q9NSU2 MTND2P2-201ENST00000434633 945 ntBASIC4.3□□□□□ -1.72
TREX1Q9NSU2 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.3□□□□□ -1.72
TREX1Q9NSU2 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 BNIP3P41-201ENST00000503774 571 ntBASIC4.3□□□□□ -1.72
TREX1Q9NSU2 IGLVIV-65-201ENST00000517313 360 ntBASIC4.3□□□□□ -1.72
TREX1Q9NSU2 VTA1P2-201ENST00000520205 911 ntBASIC4.3□□□□□ -1.72
TREX1Q9NSU2 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 OR5AN2P-201ENST00000534535 896 ntBASIC4.3□□□□□ -1.72
TREX1Q9NSU2 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 AC069240.1-201ENST00000548774 375 ntBASIC4.3□□□□□ -1.72
TREX1Q9NSU2 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 MIR4715-201ENST00000584117 79 ntBASIC4.3□□□□□ -1.72
TREX1Q9NSU2 AC025175.1-201ENST00000606482 759 ntBASIC4.3□□□□□ -1.72
TREX1Q9NSU2 AC090948.1-201ENST00000607464 549 ntBASIC4.3□□□□□ -1.72
TREX1Q9NSU2 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 AC138907.10-201ENST00000623708 983 ntBASIC4.3□□□□□ -1.72
TREX1Q9NSU2 AC140479.6-201ENST00000633535 357 ntBASIC4.3□□□□□ -1.72
TREX1Q9NSU2 PHKBP1-201ENST00000450951 1951 ntBASIC4.3□□□□□ -1.72
TREX1Q9NSU2 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.3□□□□□ -1.72
TREX1Q9NSU2 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
TREX1Q9NSU2 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.29□□□□□ -1.72
TREX1Q9NSU2 AC006971.1-201ENST00000407916 4486 ntBASIC4.29□□□□□ -1.72
TREX1Q9NSU2 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
TREX1Q9NSU2 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
TREX1Q9NSU2 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
TREX1Q9NSU2 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
TREX1Q9NSU2 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
TREX1Q9NSU2 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
TREX1Q9NSU2 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
TREX1Q9NSU2 RPL6P29-201ENST00000414863 865 ntBASIC4.29□□□□□ -1.72
TREX1Q9NSU2 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.29□□□□□ -1.72
TREX1Q9NSU2 AL161631.1-201ENST00000417933 486 ntBASIC4.29□□□□□ -1.72
TREX1Q9NSU2 RPS27AP7-201ENST00000422792 455 ntBASIC4.29□□□□□ -1.72
TREX1Q9NSU2 RPS12P5-201ENST00000423449 371 ntBASIC4.29□□□□□ -1.72
TREX1Q9NSU2 AL157831.1-201ENST00000426134 473 ntBASIC4.29□□□□□ -1.72
TREX1Q9NSU2 RPL12P28-201ENST00000430852 489 ntBASIC4.29□□□□□ -1.72
TREX1Q9NSU2 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.29□□□□□ -1.72
TREX1Q9NSU2 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.29□□□□□ -1.72
TREX1Q9NSU2 AC010374.1-201ENST00000503762 1237 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms