Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SKA3Q8IX90 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.09□□□□□ -1.75
SKA3Q8IX90 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC4.09□□□□□ -1.75
SKA3Q8IX90 AL139128.1-201ENST00000413921 941 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 CR848007.2-201ENST00000424918 787 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 SKP1P3-201ENST00000429280 487 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 USP9YP9-201ENST00000429406 715 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 MTND4LP14-201ENST00000429447 288 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 AL772161.1-201ENST00000439130 476 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.09□□□□□ -1.75
SKA3Q8IX90 AC104651.2-201ENST00000447549 528 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC4.09□□□□□ -1.75
SKA3Q8IX90 AC108463.1-201ENST00000450258 347 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.09□□□□□ -1.75
SKA3Q8IX90 RPL5P13-201ENST00000462840 709 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 NDUFB4P12-201ENST00000513465 390 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 AC034244.2-201ENST00000514668 858 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.09□□□□□ -1.75
SKA3Q8IX90 AC016550.3-201ENST00000515706 767 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC4.09□□□□□ -1.75
SKA3Q8IX90 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC4.09□□□□□ -1.75
SKA3Q8IX90 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC4.09□□□□□ -1.75
SKA3Q8IX90 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.09□□□□□ -1.75
SKA3Q8IX90 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.09□□□□□ -1.75
SKA3Q8IX90 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.09□□□□□ -1.75
SKA3Q8IX90 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.09□□□□□ -1.75
SKA3Q8IX90 AC130352.1-201ENST00000602979 661 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 AL133247.2-201ENST00000603236 482 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 AP004372.1-201ENST00000604842 844 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 AC100827.5-201ENST00000615883 426 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.09□□□□□ -1.75
SKA3Q8IX90 MIR7154-201ENST00000620673 73 ntBASIC4.09□□□□□ -1.75
SKA3Q8IX90 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
SKA3Q8IX90 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.09□□□□□ -1.75
SKA3Q8IX90 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SKA3Q8IX90 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.09□□□□□ -1.76
SKA3Q8IX90 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
SKA3Q8IX90 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.76
SKA3Q8IX90 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.08□□□□□ -1.76
SKA3Q8IX90 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.08□□□□□ -1.76
SKA3Q8IX90 AL356489.2-201ENST00000566968 3528 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.08□□□□□ -1.76
SKA3Q8IX90 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SKA3Q8IX90 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SKA3Q8IX90 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SKA3Q8IX90 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SKA3Q8IX90 RNA5SP502-201ENST00000362694 119 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SKA3Q8IX90 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
SKA3Q8IX90 MIR93-201ENST00000385024 80 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 MIR298-201ENST00000401212 88 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 OR1F12-201ENST00000402365 945 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 AL136131.1-201ENST00000406079 803 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 RAC1P3-201ENST00000416129 580 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 RBMY2KP-201ENST00000418221 992 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SKA3Q8IX90 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.08□□□□□ -1.76
SKA3Q8IX90 RPL23AP4-201ENST00000427757 463 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 DYNLL1P7-201ENST00000429273 258 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 BX119904.1-201ENST00000432026 348 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 PPIAP13-201ENST00000434706 478 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 AL353748.1-201ENST00000440753 474 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 DDX6P1-205ENST00000441966 1436 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC4.08□□□□□ -1.76
SKA3Q8IX90 AL627224.1-201ENST00000448334 444 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 RPL10P17-201ENST00000453852 316 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 AC089999.1-201ENST00000460336 374 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC4.08□□□□□ -1.76
SKA3Q8IX90 RN7SL809P-201ENST00000482040 297 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 RPL36AP41-201ENST00000493820 306 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 AC021146.7-201ENST00000509604 775 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 MTHFD2P4-201ENST00000515074 1025 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 IGHV3-63-201ENST00000518422 341 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC4.08□□□□□ -1.76
SKA3Q8IX90 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
SKA3Q8IX90 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
SKA3Q8IX90 AC105129.1-201ENST00000560250 297 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 AL121834.1-201ENST00000572284 509 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 MIR4270-201ENST00000581799 70 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 AC068790.5-201ENST00000602741 355 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 AC008536.1-201ENST00000602872 669 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 AC005520.3-201ENST00000602874 370 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 AC073091.2-201ENST00000603205 907 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 AL139395.1-201ENST00000603662 160 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.08□□□□□ -1.76
SKA3Q8IX90 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC4.08□□□□□ -1.76
SKA3Q8IX90 BMS1P21-201ENST00000634565 365 ntBASIC4.08□□□□□ -1.76
SKA3Q8IX90 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
SKA3Q8IX90 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SKA3Q8IX90 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
SKA3Q8IX90 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.08□□□□□ -1.76
SKA3Q8IX90 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.07□□□□□ -1.76
SKA3Q8IX90 EOGT-210ENST00000615922 1931 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SKA3Q8IX90 AC110792.3-201ENST00000595906 1614 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SKA3Q8IX90 OR56B2P-201ENST00000317102 954 ntBASIC4.07□□□□□ -1.76
SKA3Q8IX90 RN7SKP115-201ENST00000363177 317 ntBASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms