Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SHMT2P34897 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.35□□□□□ -1.71
SHMT2P34897 AC139769.1-204ENST00000472297 1931 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.35□□□□□ -1.71
SHMT2P34897 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SHMT2P34897 RNU6-386P-201ENST00000362650 107 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 RNU1-32P-201ENST00000363937 159 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 RNA5SP151-201ENST00000365632 117 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 AL607077.1-201ENST00000401718 499 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 AL121834.1-202ENST00000404494 277 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 GSTM3P2-201ENST00000412746 530 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 FAR2P2-201ENST00000413041 594 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 AC062016.2-201ENST00000420950 676 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 AL356387.2-201ENST00000422272 243 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 AC106901.1-201ENST00000425086 698 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 FAR2P4-202ENST00000425399 584 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.35□□□□□ -1.71
SHMT2P34897 AC011998.1-201ENST00000433403 117 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.35□□□□□ -1.71
SHMT2P34897 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC4.35□□□□□ -1.71
SHMT2P34897 RPL7P33-201ENST00000444159 742 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 RPL23AP43-201ENST00000446445 471 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.35□□□□□ -1.71
SHMT2P34897 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC4.35□□□□□ -1.71
SHMT2P34897 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.35□□□□□ -1.71
SHMT2P34897 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.35□□□□□ -1.71
SHMT2P34897 RPL21P126-201ENST00000470049 478 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 RN7SL809P-201ENST00000482040 297 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.35□□□□□ -1.71
SHMT2P34897 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.35□□□□□ -1.71
SHMT2P34897 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC4.35□□□□□ -1.71
SHMT2P34897 RNA5SP497-201ENST00000516081 97 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.35□□□□□ -1.71
SHMT2P34897 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SHMT2P34897 DYNLL1P4-201ENST00000549314 266 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.35□□□□□ -1.71
SHMT2P34897 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.35□□□□□ -1.71
SHMT2P34897 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.35□□□□□ -1.71
SHMT2P34897 AL121834.1-201ENST00000572284 509 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
SHMT2P34897 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.35□□□□□ -1.71
SHMT2P34897 AP001160.4-201ENST00000596971 382 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 RPL7P50-201ENST00000600588 727 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.35□□□□□ -1.71
SHMT2P34897 AC012213.4-201ENST00000606457 354 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 AC015813.4-201ENST00000610469 179 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 AC009704.2-201ENST00000618739 483 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 AC091905.2-201ENST00000623143 306 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 AL133243.3-201ENST00000617415 3004 ntBASIC4.35□□□□□ -1.71
SHMT2P34897 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SHMT2P34897 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SHMT2P34897 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SHMT2P34897 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SHMT2P34897 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.71
SHMT2P34897 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.34□□□□□ -1.71
SHMT2P34897 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
SHMT2P34897 AC007390.2-201ENST00000606229 3803 ntBASIC4.34□□□□□ -1.71
SHMT2P34897 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
SHMT2P34897 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
SHMT2P34897 OR52B1P-201ENST00000316506 909 ntBASIC4.34□□□□□ -1.71
SHMT2P34897 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SHMT2P34897 RNA5SP443-201ENST00000363083 132 ntBASIC4.34□□□□□ -1.71
SHMT2P34897 RNA5SP447-201ENST00000363749 119 ntBASIC4.34□□□□□ -1.71
SHMT2P34897 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC4.34□□□□□ -1.71
SHMT2P34897 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
SHMT2P34897 RN7SKP216-201ENST00000411050 312 ntBASIC4.34□□□□□ -1.71
SHMT2P34897 ELOCP19-201ENST00000411919 318 ntBASIC4.34□□□□□ -1.71
SHMT2P34897 NPM1P26-201ENST00000426339 738 ntBASIC4.34□□□□□ -1.71
SHMT2P34897 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC4.34□□□□□ -1.71
SHMT2P34897 VN1R32P-201ENST00000452234 905 ntBASIC4.34□□□□□ -1.71
SHMT2P34897 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.34□□□□□ -1.71
SHMT2P34897 RNU6-775P-201ENST00000459318 96 ntBASIC4.34□□□□□ -1.71
SHMT2P34897 AC010469.1-201ENST00000463864 576 ntBASIC4.34□□□□□ -1.71
SHMT2P34897 RPS26P28-201ENST00000470806 348 ntBASIC4.34□□□□□ -1.71
SHMT2P34897 RN7SL481P-201ENST00000477764 299 ntBASIC4.34□□□□□ -1.71
SHMT2P34897 AC108022.1-201ENST00000493466 478 ntBASIC4.34□□□□□ -1.71
SHMT2P34897 ATG10-AS1-201ENST00000504846 648 ntBASIC4.34□□□□□ -1.71
SHMT2P34897 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.34□□□□□ -1.71
SHMT2P34897 AC117525.1-201ENST00000515228 503 ntBASIC4.34□□□□□ -1.71
SHMT2P34897 RNU6-319P-201ENST00000516025 108 ntBASIC4.34□□□□□ -1.71
SHMT2P34897 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.34□□□□□ -1.71
SHMT2P34897 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC4.34□□□□□ -1.71
SHMT2P34897 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC4.34□□□□□ -1.71
SHMT2P34897 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC4.34□□□□□ -1.71
SHMT2P34897 MTATP6P25-201ENST00000574491 261 ntBASIC4.34□□□□□ -1.71
SHMT2P34897 MIR4284-201ENST00000578924 81 ntBASIC4.34□□□□□ -1.71
SHMT2P34897 AC020634.1-201ENST00000608701 549 ntBASIC4.34□□□□□ -1.71
SHMT2P34897 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SHMT2P34897 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SHMT2P34897 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SHMT2P34897 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SHMT2P34897 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
SHMT2P34897 NXPH1-205ENST00000602349 1953 ntBASIC4.34□□□□□ -1.71
SHMT2P34897 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.33□□□□□ -1.72
SHMT2P34897 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SHMT2P34897 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.33□□□□□ -1.72
SHMT2P34897 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
SHMT2P34897 AC018529.3-201ENST00000624212 2254 ntBASIC4.33□□□□□ -1.72
SHMT2P34897 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.33□□□□□ -1.72
SHMT2P34897 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms