Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 HMGB1P4-201ENST00000455362 567 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 AC091180.1-201ENST00000462104 372 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 RN7SL808P-201ENST00000496066 299 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 AC010350.1-201ENST00000504908 231 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SMARCA1P28370 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC5.83□□□□□ -1.48
SMARCA1P28370 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.83□□□□□ -1.48
SMARCA1P28370 OR5AZ1P-201ENST00000527448 943 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 AP000676.2-201ENST00000529711 301 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC5.83□□□□□ -1.48
SMARCA1P28370 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC5.83□□□□□ -1.48
SMARCA1P28370 AC068993.1-201ENST00000546724 589 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.83□□□□□ -1.48
SMARCA1P28370 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC5.83□□□□□ -1.48
SMARCA1P28370 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC5.83□□□□□ -1.48
SMARCA1P28370 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SMARCA1P28370 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.83□□□□□ -1.48
SMARCA1P28370 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC5.83□□□□□ -1.48
SMARCA1P28370 AL021707.7-201ENST00000607991 416 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 AC092106.3-201ENST00000611308 722 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 AC010975.3-201ENST00000618727 978 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 AC091905.4-201ENST00000623432 202 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 AC090897.3-201ENST00000636973 1157 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 CASC19-222ENST00000641321 1173 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 LINC01808-202ENST00000641680 1116 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 BX649567.1-201ENST00000642071 1134 ntBASIC5.83□□□□□ -1.48
SMARCA1P28370 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SMARCA1P28370 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SMARCA1P28370 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SMARCA1P28370 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.83□□□□□ -1.48
SMARCA1P28370 RMST-202ENST00000541282 2099 ntTSL 2 BASIC5.83□□□□□ -1.48
SMARCA1P28370 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SMARCA1P28370 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
SMARCA1P28370 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SMARCA1P28370 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.82□□□□□ -1.48
SMARCA1P28370 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC5.82□□□□□ -1.48
SMARCA1P28370 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SMARCA1P28370 AC002525.1-201ENST00000624392 1622 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
SMARCA1P28370 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
SMARCA1P28370 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC5.82□□□□□ -1.48
SMARCA1P28370 RNA5SP455-201ENST00000365190 119 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 RNU6-224P-201ENST00000384055 107 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 RNU6-185P-201ENST00000384421 107 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 RNU6-225P-201ENST00000384613 103 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
SMARCA1P28370 RPL21P67-201ENST00000402896 478 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 LSM5-205ENST00000409952 687 ntTSL 4 BASIC5.82□□□□□ -1.48
SMARCA1P28370 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.82□□□□□ -1.48
SMARCA1P28370 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC5.82□□□□□ -1.48
SMARCA1P28370 MTCO1P52-201ENST00000433928 531 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC5.82□□□□□ -1.48
SMARCA1P28370 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC5.82□□□□□ -1.48
SMARCA1P28370 AC073052.1-201ENST00000440417 714 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 MTND2P22-201ENST00000444325 1033 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC5.82□□□□□ -1.48
SMARCA1P28370 Z83846.1-201ENST00000446798 265 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 AL050341.1-201ENST00000447743 313 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 TCEA1P1-201ENST00000449716 880 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 RPL7P32-201ENST00000457119 744 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 RPS17P2-201ENST00000461663 408 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 RPS4XP12-201ENST00000461747 709 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 AP000563.1-201ENST00000490865 758 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.82□□□□□ -1.48
SMARCA1P28370 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC5.82□□□□□ -1.48
SMARCA1P28370 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC5.82□□□□□ -1.48
SMARCA1P28370 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC5.82□□□□□ -1.48
SMARCA1P28370 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SMARCA1P28370 AC116553.2-201ENST00000564203 463 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC5.82□□□□□ -1.48
SMARCA1P28370 VN1R78P-201ENST00000597393 564 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.82□□□□□ -1.48
SMARCA1P28370 MEMO1P5-201ENST00000604810 406 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 AC133644.2-201ENST00000608142 540 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 AP001521.2-201ENST00000608772 546 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC5.82□□□□□ -1.48
SMARCA1P28370 AC013470.4-201ENST00000619978 986 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 AP001005.3-201ENST00000622049 129 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 UGP2-231ENST00000627474 264 ntTSL 5 BASIC5.82□□□□□ -1.48
SMARCA1P28370 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.82□□□□□ -1.48
SMARCA1P28370 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.82□□□□□ -1.48
SMARCA1P28370 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.82□□□□□ -1.48
SMARCA1P28370 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC5.82□□□□□ -1.48
SMARCA1P28370 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.82□□□□□ -1.48
SMARCA1P28370 INTS6P1-201ENST00000504674 2530 ntBASIC5.82□□□□□ -1.48
SMARCA1P28370 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
SMARCA1P28370 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SMARCA1P28370 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.82□□□□□ -1.48
SMARCA1P28370 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SMARCA1P28370 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SMARCA1P28370 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
SMARCA1P28370 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SMARCA1P28370 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
SMARCA1P28370 ANKRD36P1-201ENST00000344424 659 ntBASIC5.81□□□□□ -1.48
SMARCA1P28370 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5.81□□□□□ -1.48
SMARCA1P28370 SNORA58B-201ENST00000364259 136 ntBASIC5.81□□□□□ -1.48
SMARCA1P28370 Y_RNA.578-201ENST00000390903 88 ntBASIC5.81□□□□□ -1.48
SMARCA1P28370 ATP5F1P2-201ENST00000398143 760 ntBASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 135.6 ms