Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC4.34□□□□□ -1.71
TREX1Q9NSU2 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.34□□□□□ -1.71
TREX1Q9NSU2 AC007448.1-201ENST00000582714 234 ntBASIC4.34□□□□□ -1.71
TREX1Q9NSU2 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC4.34□□□□□ -1.71
TREX1Q9NSU2 AL354984.3-201ENST00000604803 325 ntBASIC4.34□□□□□ -1.71
TREX1Q9NSU2 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC4.34□□□□□ -1.71
TREX1Q9NSU2 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.34□□□□□ -1.71
TREX1Q9NSU2 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.34□□□□□ -1.71
TREX1Q9NSU2 uc_338.13-201ENST00000618243 179 ntBASIC4.34□□□□□ -1.71
TREX1Q9NSU2 Z98755.1-201ENST00000407015 1384 ntBASIC4.34□□□□□ -1.71
TREX1Q9NSU2 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
TREX1Q9NSU2 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
TREX1Q9NSU2 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.34□□□□□ -1.72
TREX1Q9NSU2 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.34□□□□□ -1.72
TREX1Q9NSU2 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 AC103591.2-201ENST00000265259 766 ntBASIC4.33□□□□□ -1.72
TREX1Q9NSU2 OR10J6P-201ENST00000289731 930 ntBASIC4.33□□□□□ -1.72
TREX1Q9NSU2 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 RNA5SP28-201ENST00000363841 119 ntBASIC4.33□□□□□ -1.72
TREX1Q9NSU2 RNU6-398P-201ENST00000384143 109 ntBASIC4.33□□□□□ -1.72
TREX1Q9NSU2 RNA5SP332-201ENST00000391063 115 ntBASIC4.33□□□□□ -1.72
TREX1Q9NSU2 AL583835.1-201ENST00000399570 407 ntBASIC4.33□□□□□ -1.72
TREX1Q9NSU2 RPS24P12-201ENST00000402084 394 ntBASIC4.33□□□□□ -1.72
TREX1Q9NSU2 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.33□□□□□ -1.72
TREX1Q9NSU2 RPS23P10-201ENST00000416185 486 ntBASIC4.33□□□□□ -1.72
TREX1Q9NSU2 AC099336.2-201ENST00000422457 254 ntBASIC4.33□□□□□ -1.72
TREX1Q9NSU2 RBMY1KP-201ENST00000423480 476 ntBASIC4.33□□□□□ -1.72
TREX1Q9NSU2 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 AL772161.1-201ENST00000439130 476 ntBASIC4.33□□□□□ -1.72
TREX1Q9NSU2 AC099560.2-201ENST00000457554 255 ntBASIC4.33□□□□□ -1.72
TREX1Q9NSU2 AC108145.1-201ENST00000503770 153 ntBASIC4.33□□□□□ -1.72
TREX1Q9NSU2 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 AC090819.1-201ENST00000523800 1111 ntBASIC4.33□□□□□ -1.72
TREX1Q9NSU2 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 AL109766.1-201ENST00000555080 552 ntBASIC4.33□□□□□ -1.72
TREX1Q9NSU2 GLRXP2-201ENST00000555594 321 ntBASIC4.33□□□□□ -1.72
TREX1Q9NSU2 AC068831.4-201ENST00000556118 109 ntBASIC4.33□□□□□ -1.72
TREX1Q9NSU2 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 AL031666.3-201ENST00000609320 1006 ntBASIC4.33□□□□□ -1.72
TREX1Q9NSU2 AP003400.2-201ENST00000624036 666 ntBASIC4.33□□□□□ -1.72
TREX1Q9NSU2 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TREX1Q9NSU2 AC090017.1-201ENST00000548612 1779 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 RNU6-984P-201ENST00000363236 109 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 RNU6-1331P-201ENST00000363658 106 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 CYB5AP4-201ENST00000396692 399 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 AL132765.1-201ENST00000434165 553 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 HLA-N-201ENST00000437516 135 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 AL138878.2-201ENST00000440581 1241 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 CLIC4P1-201ENST00000453177 535 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 RPS27AP16-201ENST00000492222 470 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 AK3P4-201ENST00000504283 583 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 NDUFB4P12-201ENST00000513465 390 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 RN7SKP92-201ENST00000517266 244 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 AC134698.5-201ENST00000519444 336 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 AC006064.5-201ENST00000541782 248 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 AC137768.1-201ENST00000549998 553 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 AC020915.5-201ENST00000596836 964 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 AC093765.1-201ENST00000603758 881 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 AC087283.1-201ENST00000604029 1074 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 AC113403.1-201ENST00000604910 193 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 AL354950.1-201ENST00000614150 568 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 AC002044.3-201ENST00000623314 541 ntBASIC4.32□□□□□ -1.72
TREX1Q9NSU2 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TREX1Q9NSU2 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms