Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 RPL35AP21-201ENST00000437667 333 ntBASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 RPL7AP61-201ENST00000443410 636 ntBASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AL589765.3-201ENST00000446084 462 ntBASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AC037198.2-201ENST00000478845 733 ntBASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AC073073.1-201ENST00000493920 463 ntBASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 MTCO2P9-201ENST00000503214 694 ntBASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AL110118.1-201ENST00000553543 400 ntBASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AL359219.2-201ENST00000555184 348 ntBASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AC106785.3-201ENST00000564064 847 ntBASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 CD24P2-201ENST00000565486 219 ntBASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AC015911.5-201ENST00000587076 451 ntBASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AC079880.2-201ENST00000603790 1213 ntBASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AP000943.4-201ENST00000622912 357 ntBASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 AC106858.1-201ENST00000637497 429 ntBASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 ADAM5-202ENST00000399789 1942 ntBASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
CCDC3Q9BQI4 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
CCDC3Q9BQI4 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
CCDC3Q9BQI4 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.65□□□□□ -1.66
CCDC3Q9BQI4 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 NAP1L4P1-201ENST00000319092 1157 ntBASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 HMGB1P10-201ENST00000395823 563 ntBASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 TATDN1P1-201ENST00000414123 891 ntBASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AL606495.1-201ENST00000422100 813 ntBASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AL512637.2-201ENST00000431287 1256 ntBASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 MOB1AP2-201ENST00000446060 614 ntBASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AL672167.3-201ENST00000465951 960 ntBASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 RPL7AP10-201ENST00000481016 791 ntBASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AC068587.1-201ENST00000483613 781 ntBASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AC073358.1-201ENST00000505671 684 ntBASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 SETP1-201ENST00000556014 845 ntBASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 MIR4277-201ENST00000578298 84 ntBASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AL121932.1-201ENST00000605542 214 ntBASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AC073137.1-201ENST00000605636 634 ntBASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AL356274.1-201ENST00000617064 410 ntBASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AL359757.1-201ENST00000623176 255 ntBASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AL592494.2-201ENST00000425455 1548 ntBASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 AC021242.1-201ENST00000507315 2035 ntBASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC3Q9BQI4 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC3Q9BQI4 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms