Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC112503.1-201ENST00000608436 391 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 AC000068.2-201ENST00000608816 460 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC6.36□□□□□ -1.39
HMGB1P09429 AL109620.1-201ENST00000618738 1197 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC6.36□□□□□ -1.39
HMGB1P09429 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC6.36□□□□□ -1.39
HMGB1P09429 AC124312.6-202ENST00000623624 418 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
HMGB1P09429 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC6.36□□□□□ -1.39
HMGB1P09429 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC6.36□□□□□ -1.39
HMGB1P09429 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC6.36□□□□□ -1.39
HMGB1P09429 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC6.36□□□□□ -1.39
HMGB1P09429 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC6.36□□□□□ -1.39
HMGB1P09429 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC6.36□□□□□ -1.39
HMGB1P09429 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
HMGB1P09429 AC005005.4-201ENST00000623789 16698 ntBASIC6.36□□□□□ -1.39
HMGB1P09429 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
HMGB1P09429 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.35□□□□□ -1.39
HMGB1P09429 EED-206ENST00000527888 1422 ntTSL 2 BASIC6.35□□□□□ -1.39
HMGB1P09429 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
HMGB1P09429 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
HMGB1P09429 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
HMGB1P09429 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
HMGB1P09429 RNA5SP234-201ENST00000363916 119 ntBASIC6.35□□□□□ -1.39
HMGB1P09429 RN7SKP69-201ENST00000365390 305 ntBASIC6.35□□□□□ -1.39
HMGB1P09429 BPHL-201ENST00000380368 797 ntTSL 5 BASIC6.35□□□□□ -1.39
HMGB1P09429 SNORA17A-201ENST00000391185 133 ntBASIC6.35□□□□□ -1.39
HMGB1P09429 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC6.35□□□□□ -1.39
HMGB1P09429 MTND4P22-201ENST00000413116 1169 ntBASIC6.35□□□□□ -1.39
HMGB1P09429 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC6.35□□□□□ -1.39
HMGB1P09429 AC079809.1-201ENST00000415468 276 ntBASIC6.35□□□□□ -1.39
HMGB1P09429 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC6.35□□□□□ -1.39
HMGB1P09429 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC6.35□□□□□ -1.39
HMGB1P09429 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC6.35□□□□□ -1.39
HMGB1P09429 OR2AH1P-201ENST00000425717 928 ntBASIC6.35□□□□□ -1.39
HMGB1P09429 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC6.35□□□□□ -1.39
HMGB1P09429 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC6.35□□□□□ -1.39
HMGB1P09429 ZNF736P1Y-201ENST00000440402 1276 ntBASIC6.35□□□□□ -1.39
HMGB1P09429 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC6.35□□□□□ -1.39
HMGB1P09429 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC6.35□□□□□ -1.39
HMGB1P09429 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC6.35□□□□□ -1.39
HMGB1P09429 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC6.35□□□□□ -1.39
HMGB1P09429 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC6.35□□□□□ -1.39
HMGB1P09429 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC6.35□□□□□ -1.39
HMGB1P09429 AC244505.3-201ENST00000454598 187 ntBASIC6.35□□□□□ -1.39
HMGB1P09429 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC6.35□□□□□ -1.39
HMGB1P09429 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC6.35□□□□□ -1.39
HMGB1P09429 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
HMGB1P09429 AC100832.1-201ENST00000471945 383 ntBASIC6.35□□□□□ -1.39
HMGB1P09429 AC005726.1-201ENST00000494679 427 ntBASIC6.35□□□□□ -1.39
HMGB1P09429 AC026414.1-201ENST00000504046 698 ntBASIC6.35□□□□□ -1.39
HMGB1P09429 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC6.35□□□□□ -1.39
HMGB1P09429 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC6.35□□□□□ -1.39
HMGB1P09429 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC6.35□□□□□ -1.39
HMGB1P09429 RNA5SP360-201ENST00000516555 118 ntBASIC6.35□□□□□ -1.39
HMGB1P09429 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC6.35□□□□□ -1.39
HMGB1P09429 CASC19-203ENST00000523510 575 ntTSL 3 BASIC6.35□□□□□ -1.39
HMGB1P09429 AC104417.1-201ENST00000523974 751 ntBASIC6.35□□□□□ -1.39
HMGB1P09429 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC6.35□□□□□ -1.39
HMGB1P09429 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC6.35□□□□□ -1.39
HMGB1P09429 OR6C73P-201ENST00000546432 358 ntBASIC6.35□□□□□ -1.39
HMGB1P09429 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
HMGB1P09429 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC6.35□□□□□ -1.39
HMGB1P09429 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
HMGB1P09429 AC074051.3-201ENST00000570238 358 ntBASIC6.35□□□□□ -1.39
HMGB1P09429 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
HMGB1P09429 UBA2-208ENST00000592791 910 ntTSL 2 BASIC6.35□□□□□ -1.39
HMGB1P09429 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC6.35□□□□□ -1.39
HMGB1P09429 AC073091.2-201ENST00000603205 907 ntBASIC6.35□□□□□ -1.39
HMGB1P09429 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC6.35□□□□□ -1.39
HMGB1P09429 AP002802.2-201ENST00000605877 235 ntBASIC6.35□□□□□ -1.39
HMGB1P09429 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC6.35□□□□□ -1.39
HMGB1P09429 SNORA17.5-201ENST00000630429 132 ntBASIC6.35□□□□□ -1.39
HMGB1P09429 AL355852.1-201ENST00000454081 1771 ntBASIC6.35□□□□□ -1.39
HMGB1P09429 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
HMGB1P09429 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC6.35□□□□□ -1.39
HMGB1P09429 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC6.35□□□□□ -1.39
HMGB1P09429 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC6.35□□□□□ -1.39
HMGB1P09429 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
HMGB1P09429 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
HMGB1P09429 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
HMGB1P09429 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
HMGB1P09429 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC6.34□□□□□ -1.39
HMGB1P09429 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
HMGB1P09429 UBE2Q2P1-202ENST00000354771 883 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 RNU6-619P-201ENST00000365146 108 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 OR1L6-202ENST00000373684 1044 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 SNORA5.1-201ENST00000384275 131 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 MIR708-201ENST00000390708 88 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 MTCO3P31-201ENST00000405526 789 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC6.34□□□□□ -1.39
HMGB1P09429 SNORA11.5-201ENST00000408163 128 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC6.34□□□□□ -1.39
HMGB1P09429 COX6CP15-201ENST00000426313 211 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 AC096632.1-201ENST00000427395 310 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 AC012075.1-201ENST00000436549 580 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC6.34□□□□□ -1.39
HMGB1P09429 RPS11P7-201ENST00000442125 465 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 RNF2P1-201ENST00000442955 1010 ntBASIC6.34□□□□□ -1.39
HMGB1P09429 RN7SL423P-201ENST00000486202 304 ntBASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms