Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
COL3A1P02461 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL3A1P02461 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
COL3A1P02461 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL3A1P02461 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL3A1P02461 AC068870.3-201ENST00000625077 2536 ntBASIC5.87□□□□□ -1.47
COL3A1P02461 NXPH1-205ENST00000602349 1953 ntBASIC5.87□□□□□ -1.47
COL3A1P02461 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL3A1P02461 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL3A1P02461 CCNB2P1-201ENST00000399411 1150 ntBASIC5.87□□□□□ -1.47
COL3A1P02461 DHFRP5-201ENST00000406944 564 ntBASIC5.87□□□□□ -1.47
COL3A1P02461 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC5.87□□□□□ -1.47
COL3A1P02461 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.87□□□□□ -1.47
COL3A1P02461 AC007064.3-201ENST00000422608 359 ntBASIC5.87□□□□□ -1.47
COL3A1P02461 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC5.87□□□□□ -1.47
COL3A1P02461 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.87□□□□□ -1.47
COL3A1P02461 RNFT1P2-201ENST00000443064 757 ntBASIC5.87□□□□□ -1.47
COL3A1P02461 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC5.87□□□□□ -1.47
COL3A1P02461 RSL24D1P3-201ENST00000449255 495 ntBASIC5.87□□□□□ -1.47
COL3A1P02461 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC5.87□□□□□ -1.47
COL3A1P02461 AC090013.1-201ENST00000485147 480 ntBASIC5.87□□□□□ -1.47
COL3A1P02461 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
COL3A1P02461 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC5.87□□□□□ -1.47
COL3A1P02461 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC5.87□□□□□ -1.47
COL3A1P02461 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL3A1P02461 AC090515.3-201ENST00000560431 315 ntBASIC5.87□□□□□ -1.47
COL3A1P02461 AC009303.3-201ENST00000591103 736 ntBASIC5.87□□□□□ -1.47
COL3A1P02461 Z98200.1-201ENST00000607298 470 ntBASIC5.87□□□□□ -1.47
COL3A1P02461 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC5.87□□□□□ -1.47
COL3A1P02461 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL3A1P02461 AC138965.3-201ENST00000623875 498 ntBASIC5.87□□□□□ -1.47
COL3A1P02461 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC5.87□□□□□ -1.47
COL3A1P02461 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL3A1P02461 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL3A1P02461 AC099654.3-201ENST00000447087 1546 ntBASIC5.87□□□□□ -1.47
COL3A1P02461 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
COL3A1P02461 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL3A1P02461 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL3A1P02461 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL3A1P02461 AC025031.4-201ENST00000621248 3271 ntBASIC5.87□□□□□ -1.47
COL3A1P02461 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL3A1P02461 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.86□□□□□ -1.47
COL3A1P02461 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.86□□□□□ -1.47
COL3A1P02461 EEF1A1P42-201ENST00000613436 1331 ntBASIC5.86□□□□□ -1.47
COL3A1P02461 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL3A1P02461 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.86□□□□□ -1.47
COL3A1P02461 AL731566.1-201ENST00000620490 1937 ntBASIC5.86□□□□□ -1.47
COL3A1P02461 NRK-204ENST00000540278 1687 ntTSL 2 BASIC5.86□□□□□ -1.47
COL3A1P02461 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
COL3A1P02461 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL3A1P02461 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL3A1P02461 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
COL3A1P02461 MIR122-201ENST00000385044 85 ntBASIC5.86□□□□□ -1.47
COL3A1P02461 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
COL3A1P02461 TAS2R15P-201ENST00000390674 928 ntBASIC5.86□□□□□ -1.47
COL3A1P02461 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC5.86□□□□□ -1.47
COL3A1P02461 AC092648.1-201ENST00000425870 423 ntBASIC5.86□□□□□ -1.47
COL3A1P02461 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC5.86□□□□□ -1.47
COL3A1P02461 MTND1P33-201ENST00000446251 917 ntBASIC5.86□□□□□ -1.47
COL3A1P02461 PHBP16-201ENST00000446318 950 ntBASIC5.86□□□□□ -1.47
COL3A1P02461 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC5.86□□□□□ -1.47
COL3A1P02461 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC5.86□□□□□ -1.47
COL3A1P02461 DEFB109F-201ENST00000491870 277 ntBASIC5.86□□□□□ -1.47
COL3A1P02461 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
COL3A1P02461 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC5.86□□□□□ -1.47
COL3A1P02461 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC5.86□□□□□ -1.47
COL3A1P02461 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC5.86□□□□□ -1.47
COL3A1P02461 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC5.86□□□□□ -1.47
COL3A1P02461 AC025857.1-201ENST00000525252 377 ntBASIC5.86□□□□□ -1.47
COL3A1P02461 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC5.86□□□□□ -1.47
COL3A1P02461 DERA-209ENST00000532964 854 ntTSL 5 BASIC5.86□□□□□ -1.47
COL3A1P02461 AC124068.1-201ENST00000563131 678 ntBASIC5.86□□□□□ -1.47
COL3A1P02461 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC5.86□□□□□ -1.47
COL3A1P02461 AC080013.3-201ENST00000606839 578 ntBASIC5.86□□□□□ -1.47
COL3A1P02461 AC096586.1-201ENST00000610267 561 ntBASIC5.86□□□□□ -1.47
COL3A1P02461 uc_338.13-201ENST00000618243 179 ntBASIC5.86□□□□□ -1.47
COL3A1P02461 AP000676.4-201ENST00000624659 623 ntBASIC5.86□□□□□ -1.47
COL3A1P02461 AC097372.4-201ENST00000625025 466 ntBASIC5.86□□□□□ -1.47
COL3A1P02461 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL3A1P02461 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
COL3A1P02461 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.86□□□□□ -1.47
COL3A1P02461 CASC19-204ENST00000641001 2055 ntBASIC5.86□□□□□ -1.47
COL3A1P02461 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL3A1P02461 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
COL3A1P02461 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL3A1P02461 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.86□□□□□ -1.47
COL3A1P02461 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
COL3A1P02461 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL3A1P02461 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL3A1P02461 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC5.85□□□□□ -1.47
COL3A1P02461 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
COL3A1P02461 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
COL3A1P02461 OR6C69P-201ENST00000394268 893 ntBASIC5.85□□□□□ -1.47
COL3A1P02461 AL353692.2-201ENST00000407054 335 ntBASIC5.85□□□□□ -1.47
COL3A1P02461 UBE2V1P15-201ENST00000407776 448 ntBASIC5.85□□□□□ -1.47
COL3A1P02461 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC5.85□□□□□ -1.47
COL3A1P02461 OR8G2P-201ENST00000412796 908 ntBASIC5.85□□□□□ -1.47
COL3A1P02461 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL3A1P02461 GTF2IP2-201ENST00000424290 697 ntBASIC5.85□□□□□ -1.47
COL3A1P02461 AL590623.1-201ENST00000427864 105 ntBASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms