Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC136624.4-201ENST00000573044 370 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC4.38□□□□□ -1.71
HOXD4P09016 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.38□□□□□ -1.71
HOXD4P09016 RPL26P30-202ENST00000602923 645 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 AC012213.4-201ENST00000606457 354 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 AC091979.2-201ENST00000607514 214 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 AC010424.2-201ENST00000607594 443 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 AC007497.1-201ENST00000610421 561 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 AC004241.3-201ENST00000611728 517 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 AC131238.1-201ENST00000617135 328 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 AC015722.2-201ENST00000622210 551 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXD4P09016 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC4.38□□□□□ -1.71
HOXD4P09016 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.38□□□□□ -1.71
HOXD4P09016 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXD4P09016 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HOXD4P09016 AC108751.5-201ENST00000492880 1336 ntBASIC4.38□□□□□ -1.71
HOXD4P09016 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXD4P09016 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXD4P09016 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXD4P09016 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXD4P09016 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXD4P09016 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
HOXD4P09016 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.38□□□□□ -1.71
HOXD4P09016 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXD4P09016 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXD4P09016 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXD4P09016 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXD4P09016 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXD4P09016 ZFRP1-201ENST00000457579 2970 ntBASIC4.37□□□□□ -1.71
HOXD4P09016 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXD4P09016 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXD4P09016 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.37□□□□□ -1.71
HOXD4P09016 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXD4P09016 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.37□□□□□ -1.71
HOXD4P09016 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
HOXD4P09016 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC4.37□□□□□ -1.71
HOXD4P09016 RNA5SP191-201ENST00000362585 102 ntBASIC4.37□□□□□ -1.71
HOXD4P09016 SNORA70.2-201ENST00000364506 135 ntBASIC4.37□□□□□ -1.71
HOXD4P09016 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXD4P09016 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC4.37□□□□□ -1.71
HOXD4P09016 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXD4P09016 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXD4P09016 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXD4P09016 AC093084.1-201ENST00000424233 687 ntBASIC4.37□□□□□ -1.71
HOXD4P09016 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC4.37□□□□□ -1.71
HOXD4P09016 RPL18P10-201ENST00000425606 538 ntBASIC4.37□□□□□ -1.71
HOXD4P09016 RPL36AP15-201ENST00000444514 266 ntBASIC4.37□□□□□ -1.71
HOXD4P09016 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXD4P09016 ZNF736P6Y-201ENST00000447526 1213 ntBASIC4.37□□□□□ -1.71
HOXD4P09016 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC4.37□□□□□ -1.71
HOXD4P09016 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC4.37□□□□□ -1.71
HOXD4P09016 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXD4P09016 RN7SL517P-201ENST00000462240 305 ntBASIC4.37□□□□□ -1.71
HOXD4P09016 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXD4P09016 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.37□□□□□ -1.71
HOXD4P09016 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.37□□□□□ -1.71
HOXD4P09016 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXD4P09016 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXD4P09016 RN7SKP92-201ENST00000517266 244 ntBASIC4.37□□□□□ -1.71
HOXD4P09016 SEC11B-201ENST00000518383 499 ntBASIC4.37□□□□□ -1.71
HOXD4P09016 AC105031.1-201ENST00000518550 476 ntBASIC4.37□□□□□ -1.71
HOXD4P09016 SOX5P1-201ENST00000524155 1127 ntBASIC4.37□□□□□ -1.71
HOXD4P09016 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.37□□□□□ -1.71
HOXD4P09016 PARP1P2-201ENST00000556806 195 ntBASIC4.37□□□□□ -1.71
HOXD4P09016 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXD4P09016 AL671309.1-201ENST00000603750 544 ntBASIC4.37□□□□□ -1.71
HOXD4P09016 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXD4P09016 MIR6758-201ENST00000620653 63 ntBASIC4.37□□□□□ -1.71
HOXD4P09016 AC097372.4-201ENST00000625025 466 ntBASIC4.37□□□□□ -1.71
HOXD4P09016 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXD4P09016 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXD4P09016 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXD4P09016 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXD4P09016 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXD4P09016 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.37□□□□□ -1.71
HOXD4P09016 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXD4P09016 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXD4P09016 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
HOXD4P09016 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXD4P09016 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
HOXD4P09016 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXD4P09016 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXD4P09016 OR4K15-201ENST00000305051 1216 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 RPL32P3-201ENST00000359025 275 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 RNA5SP332-201ENST00000391063 115 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXD4P09016 RPL5P19-201ENST00000404228 893 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXD4P09016 P2RY10P2-201ENST00000416730 913 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 OR51A6P-201ENST00000418680 1004 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 AC069213.2-201ENST00000420238 366 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 AC004074.1-201ENST00000421810 1063 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 AC073464.3-201ENST00000422564 712 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 NPM1P26-201ENST00000426339 738 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXD4P09016 CNOT7P1-201ENST00000429006 852 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 UBE2V1P6-201ENST00000430840 422 ntBASIC4.36□□□□□ -1.71
HOXD4P09016 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms