Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RPL23AP71-201ENST00000470966 469 ntBASIC6.45□□□□□ -1.38
LIG3P49916 AC023424.2-201ENST00000493479 777 ntBASIC6.45□□□□□ -1.38
LIG3P49916 FCF1P3-201ENST00000496394 590 ntBASIC6.45□□□□□ -1.38
LIG3P49916 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC6.45□□□□□ -1.38
LIG3P49916 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC6.45□□□□□ -1.38
LIG3P49916 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC6.45□□□□□ -1.38
LIG3P49916 APOBEC3AP1-201ENST00000511396 287 ntBASIC6.45□□□□□ -1.38
LIG3P49916 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC6.45□□□□□ -1.38
LIG3P49916 RNA5SP216-201ENST00000516111 123 ntBASIC6.45□□□□□ -1.38
LIG3P49916 COX6B1P6-201ENST00000522347 255 ntBASIC6.45□□□□□ -1.38
LIG3P49916 OSBPL9P2-201ENST00000526582 1228 ntBASIC6.45□□□□□ -1.38
LIG3P49916 RGS4-207ENST00000527809 817 ntTSL 4 BASIC6.45□□□□□ -1.38
LIG3P49916 AC118273.2-201ENST00000532092 465 ntBASIC6.45□□□□□ -1.38
LIG3P49916 AC024405.1-201ENST00000532521 1042 ntBASIC6.45□□□□□ -1.38
LIG3P49916 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC6.45□□□□□ -1.38
LIG3P49916 OLR1-209ENST00000543993 822 ntTSL 2 BASIC6.45□□□□□ -1.38
LIG3P49916 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC6.45□□□□□ -1.38
LIG3P49916 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC6.45□□□□□ -1.38
LIG3P49916 TPRX1P1-201ENST00000557620 319 ntBASIC6.45□□□□□ -1.38
LIG3P49916 AC093519.1-201ENST00000566109 298 ntBASIC6.45□□□□□ -1.38
LIG3P49916 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
LIG3P49916 AC090651.1-201ENST00000567865 634 ntBASIC6.45□□□□□ -1.38
LIG3P49916 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC6.45□□□□□ -1.38
LIG3P49916 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC6.45□□□□□ -1.38
LIG3P49916 AC073046.2-201ENST00000604756 527 ntBASIC6.45□□□□□ -1.38
LIG3P49916 IMMP1LP1-201ENST00000605170 488 ntBASIC6.45□□□□□ -1.38
LIG3P49916 AC012409.3-201ENST00000611343 981 ntBASIC6.45□□□□□ -1.38
LIG3P49916 AC091304.9-201ENST00000612091 226 ntBASIC6.45□□□□□ -1.38
LIG3P49916 AC025253.1-201ENST00000613623 543 ntBASIC6.45□□□□□ -1.38
LIG3P49916 DRG1-207ENST00000629688 309 ntTSL 5 BASIC6.45□□□□□ -1.38
LIG3P49916 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC6.45□□□□□ -1.38
LIG3P49916 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
LIG3P49916 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC6.45□□□□□ -1.38
LIG3P49916 AC119744.1-201ENST00000454746 1715 ntBASIC6.45□□□□□ -1.38
LIG3P49916 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
LIG3P49916 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC6.44□□□□□ -1.38
LIG3P49916 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
LIG3P49916 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
LIG3P49916 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
LIG3P49916 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC6.44□□□□□ -1.38
LIG3P49916 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
LIG3P49916 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC6.44□□□□□ -1.38
LIG3P49916 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC6.44□□□□□ -1.38
LIG3P49916 CYP1D1P-201ENST00000416662 1433 ntBASIC6.44□□□□□ -1.38
LIG3P49916 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC6.44□□□□□ -1.38
LIG3P49916 AC105235.1-201ENST00000623208 1816 ntBASIC6.44□□□□□ -1.38
LIG3P49916 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
LIG3P49916 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
LIG3P49916 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
LIG3P49916 RNU6-723P-201ENST00000383973 107 ntBASIC6.44□□□□□ -1.38
LIG3P49916 RNU6-317P-201ENST00000384031 107 ntBASIC6.44□□□□□ -1.38
LIG3P49916 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
LIG3P49916 RPL17P50-201ENST00000396131 546 ntBASIC6.44□□□□□ -1.38
LIG3P49916 RN7SKP86-201ENST00000410454 332 ntBASIC6.44□□□□□ -1.38
LIG3P49916 RNU2-18P-201ENST00000411224 162 ntBASIC6.44□□□□□ -1.38
LIG3P49916 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC6.44□□□□□ -1.38
LIG3P49916 RPL24P2-201ENST00000421023 475 ntBASIC6.44□□□□□ -1.38
LIG3P49916 AC007562.1-201ENST00000421819 517 ntBASIC6.44□□□□□ -1.38
LIG3P49916 GLRXP1-201ENST00000423261 334 ntBASIC6.44□□□□□ -1.38
LIG3P49916 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
LIG3P49916 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC6.44□□□□□ -1.38
LIG3P49916 AC073069.1-201ENST00000428657 441 ntBASIC6.44□□□□□ -1.38
LIG3P49916 AC022022.1-201ENST00000430304 178 ntBASIC6.44□□□□□ -1.38
LIG3P49916 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC6.44□□□□□ -1.38
LIG3P49916 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC6.44□□□□□ -1.38
LIG3P49916 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC6.44□□□□□ -1.38
LIG3P49916 AC023274.2-201ENST00000445264 521 ntBASIC6.44□□□□□ -1.38
LIG3P49916 AL022237.1-201ENST00000446663 358 ntBASIC6.44□□□□□ -1.38
LIG3P49916 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC6.44□□□□□ -1.38
LIG3P49916 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC6.44□□□□□ -1.38
LIG3P49916 RNU6-314P-201ENST00000516574 104 ntBASIC6.44□□□□□ -1.38
LIG3P49916 RNU6-528P-201ENST00000516926 100 ntBASIC6.44□□□□□ -1.38
LIG3P49916 RN7SKP283-201ENST00000517197 270 ntBASIC6.44□□□□□ -1.38
LIG3P49916 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC6.44□□□□□ -1.38
LIG3P49916 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC6.44□□□□□ -1.38
LIG3P49916 HIGD1AP6-201ENST00000521833 279 ntBASIC6.44□□□□□ -1.38
LIG3P49916 CYCSP25-201ENST00000525280 316 ntBASIC6.44□□□□□ -1.38
LIG3P49916 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC6.44□□□□□ -1.38
LIG3P49916 AC008055.1-201ENST00000547032 609 ntBASIC6.44□□□□□ -1.38
LIG3P49916 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC6.44□□□□□ -1.38
LIG3P49916 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC6.44□□□□□ -1.38
LIG3P49916 AC136618.2-201ENST00000575091 400 ntBASIC6.44□□□□□ -1.38
LIG3P49916 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC6.44□□□□□ -1.38
LIG3P49916 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC6.44□□□□□ -1.38
LIG3P49916 GLYATL1P2-202ENST00000588046 902 ntBASIC6.44□□□□□ -1.38
LIG3P49916 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC6.44□□□□□ -1.38
LIG3P49916 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC6.44□□□□□ -1.38
LIG3P49916 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC6.44□□□□□ -1.38
LIG3P49916 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC6.44□□□□□ -1.38
LIG3P49916 CR381653.2-201ENST00000624041 768 ntBASIC6.44□□□□□ -1.38
LIG3P49916 AC015726.3-201ENST00000624501 418 ntBASIC6.44□□□□□ -1.38
LIG3P49916 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC6.44□□□□□ -1.38
LIG3P49916 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC6.44□□□□□ -1.38
LIG3P49916 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
LIG3P49916 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
LIG3P49916 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
LIG3P49916 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
LIG3P49916 CDC27P2-201ENST00000425026 1922 ntBASIC6.44□□□□□ -1.38
LIG3P49916 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC6.44□□□□□ -1.38
LIG3P49916 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms