Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 OR7E125P-201ENST00000443450 846 ntBASIC5.88□□□□□ -1.47
SMARCA1P28370 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC5.88□□□□□ -1.47
SMARCA1P28370 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC5.88□□□□□ -1.47
SMARCA1P28370 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.88□□□□□ -1.47
SMARCA1P28370 RN7SL97P-201ENST00000486780 299 ntBASIC5.88□□□□□ -1.47
SMARCA1P28370 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC5.88□□□□□ -1.47
SMARCA1P28370 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC5.88□□□□□ -1.47
SMARCA1P28370 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC5.88□□□□□ -1.47
SMARCA1P28370 RNA5SP303-201ENST00000516192 130 ntBASIC5.88□□□□□ -1.47
SMARCA1P28370 RNU6-1004P-201ENST00000516584 111 ntBASIC5.88□□□□□ -1.47
SMARCA1P28370 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.88□□□□□ -1.47
SMARCA1P28370 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC5.88□□□□□ -1.47
SMARCA1P28370 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC5.88□□□□□ -1.47
SMARCA1P28370 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.88□□□□□ -1.47
SMARCA1P28370 APPL2-203ENST00000546731 684 ntTSL 2 BASIC5.88□□□□□ -1.47
SMARCA1P28370 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC5.88□□□□□ -1.47
SMARCA1P28370 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.88□□□□□ -1.47
SMARCA1P28370 NDUFB4P11-201ENST00000560510 395 ntBASIC5.88□□□□□ -1.47
SMARCA1P28370 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC5.88□□□□□ -1.47
SMARCA1P28370 PRPF19P1-201ENST00000584766 898 ntBASIC5.88□□□□□ -1.47
SMARCA1P28370 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC5.88□□□□□ -1.47
SMARCA1P28370 AC107952.2-201ENST00000606048 486 ntBASIC5.88□□□□□ -1.47
SMARCA1P28370 AL445222.1-201ENST00000607259 628 ntBASIC5.88□□□□□ -1.47
SMARCA1P28370 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.88□□□□□ -1.47
SMARCA1P28370 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.88□□□□□ -1.47
SMARCA1P28370 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.88□□□□□ -1.47
SMARCA1P28370 AC011472.4-201ENST00000615848 491 ntBASIC5.88□□□□□ -1.47
SMARCA1P28370 AC073569.3-201ENST00000619055 682 ntBASIC5.88□□□□□ -1.47
SMARCA1P28370 AC123767.1-202ENST00000620407 817 ntBASIC5.88□□□□□ -1.47
SMARCA1P28370 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC5.88□□□□□ -1.47
SMARCA1P28370 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
SMARCA1P28370 HSPA8P17-201ENST00000427029 1382 ntBASIC5.88□□□□□ -1.47
SMARCA1P28370 VN2R3P-201ENST00000422626 1412 ntBASIC5.88□□□□□ -1.47
SMARCA1P28370 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
SMARCA1P28370 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SMARCA1P28370 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SMARCA1P28370 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.88□□□□□ -1.47
SMARCA1P28370 AC007996.1-201ENST00000620414 2821 ntBASIC5.88□□□□□ -1.47
SMARCA1P28370 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SMARCA1P28370 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SMARCA1P28370 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC5.88□□□□□ -1.47
SMARCA1P28370 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SMARCA1P28370 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
SMARCA1P28370 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
SMARCA1P28370 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
SMARCA1P28370 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
SMARCA1P28370 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SMARCA1P28370 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SMARCA1P28370 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SMARCA1P28370 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
SMARCA1P28370 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SMARCA1P28370 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
SMARCA1P28370 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
SMARCA1P28370 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SMARCA1P28370 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
SMARCA1P28370 RNY3P9-201ENST00000384727 106 ntBASIC5.87□□□□□ -1.47
SMARCA1P28370 MIR320B1-201ENST00000390209 79 ntBASIC5.87□□□□□ -1.47
SMARCA1P28370 RPS27AP11-201ENST00000402798 447 ntBASIC5.87□□□□□ -1.47
SMARCA1P28370 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC5.87□□□□□ -1.47
SMARCA1P28370 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC5.87□□□□□ -1.47
SMARCA1P28370 DPY19L1P2-201ENST00000426647 915 ntBASIC5.87□□□□□ -1.47
SMARCA1P28370 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.87□□□□□ -1.47
SMARCA1P28370 BX323845.1-201ENST00000432417 179 ntBASIC5.87□□□□□ -1.47
SMARCA1P28370 RPS29P9-201ENST00000440360 171 ntBASIC5.87□□□□□ -1.47
SMARCA1P28370 RPL34P20-201ENST00000442771 351 ntBASIC5.87□□□□□ -1.47
SMARCA1P28370 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.87□□□□□ -1.47
SMARCA1P28370 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC5.87□□□□□ -1.47
SMARCA1P28370 OR51B8P-201ENST00000449892 769 ntBASIC5.87□□□□□ -1.47
SMARCA1P28370 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC5.87□□□□□ -1.47
SMARCA1P28370 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.87□□□□□ -1.47
SMARCA1P28370 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.87□□□□□ -1.47
SMARCA1P28370 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.87□□□□□ -1.47
SMARCA1P28370 AL671862.1-201ENST00000515851 349 ntBASIC5.87□□□□□ -1.47
SMARCA1P28370 RN7SKP147-201ENST00000517154 244 ntBASIC5.87□□□□□ -1.47
SMARCA1P28370 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC5.87□□□□□ -1.47
SMARCA1P28370 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC5.87□□□□□ -1.47
SMARCA1P28370 OR5AK3P-201ENST00000527486 1297 ntBASIC5.87□□□□□ -1.47
SMARCA1P28370 LRRC6P1-201ENST00000532188 885 ntBASIC5.87□□□□□ -1.47
SMARCA1P28370 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.87□□□□□ -1.47
SMARCA1P28370 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
SMARCA1P28370 AC018552.1-201ENST00000562099 811 ntBASIC5.87□□□□□ -1.47
SMARCA1P28370 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SMARCA1P28370 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.87□□□□□ -1.47
SMARCA1P28370 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.87□□□□□ -1.47
SMARCA1P28370 AC008536.1-201ENST00000602872 669 ntBASIC5.87□□□□□ -1.47
SMARCA1P28370 AC105254.2-201ENST00000603636 436 ntBASIC5.87□□□□□ -1.47
SMARCA1P28370 AC114878.2-201ENST00000604863 1251 ntBASIC5.87□□□□□ -1.47
SMARCA1P28370 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC5.87□□□□□ -1.47
SMARCA1P28370 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC5.87□□□□□ -1.47
SMARCA1P28370 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.87□□□□□ -1.47
SMARCA1P28370 AC231759.1-201ENST00000616455 597 ntBASIC5.87□□□□□ -1.47
SMARCA1P28370 AP003485.2-201ENST00000623636 610 ntBASIC5.87□□□□□ -1.47
SMARCA1P28370 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.87□□□□□ -1.47
SMARCA1P28370 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SMARCA1P28370 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SMARCA1P28370 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SMARCA1P28370 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC5.87□□□□□ -1.47
SMARCA1P28370 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SMARCA1P28370 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
SMARCA1P28370 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms