Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ATF1P1-201ENST00000406040 927 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 SNRPEP6-201ENST00000407465 277 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 RNU6-757P-201ENST00000410334 100 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AL356968.2-201ENST00000412769 1257 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 EEF1A1P40-201ENST00000412883 573 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 ARAFP1-201ENST00000422172 605 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AC023141.3-201ENST00000436698 278 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AL353662.1-201ENST00000439099 327 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AC093155.1-201ENST00000440164 826 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 ANKRD30BP3-201ENST00000444850 1070 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AC007327.1-201ENST00000447461 264 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 ANK3-207ENST00000460468 677 ntTSL 3 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AC092865.4-201ENST00000477936 615 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AC091951.2-201ENST00000500762 203 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 SNORA20.3-201ENST00000516880 132 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AC078899.1-201ENST00000521432 1185 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 FAU-203ENST00000525297 355 ntTSL 5 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 DEFB130C-202ENST00000530001 230 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AC074029.1-201ENST00000552531 1044 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AC116553.2-201ENST00000564203 463 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 UBE2FP2-201ENST00000566646 462 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AC005498.1-201ENST00000592125 465 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 MTCO3P22-201ENST00000603219 784 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AL162730.1-201ENST00000605734 292 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AL355974.3-201ENST00000617383 467 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 FRG1KP-201ENST00000623592 341 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AC111152.1-202ENST00000635848 339 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AC024614.3-201ENST00000637860 256 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 TCP11X1-202ENST00000622971 1372 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 PARP4P2-201ENST00000446672 3326 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AC130304.1-201ENST00000622942 2385 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AL391994.1-201ENST00000254724 282 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 CBX3P1-201ENST00000325243 554 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 RNA5SP211-201ENST00000365516 117 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 Y_RNA.465-201ENST00000384293 102 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 RPL11P3-201ENST00000395256 523 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 GCNT1P4-201ENST00000404096 329 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AL096711.1-201ENST00000404780 554 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AC009237.5-201ENST00000414271 501 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AC013429.2-201ENST00000418798 781 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AC099677.3-201ENST00000427081 395 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AL590103.1-201ENST00000434488 307 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AC242426.1-201ENST00000435270 960 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 HSD52-202ENST00000436225 772 ntTSL 3 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AC097463.1-201ENST00000447288 481 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 RPS23P9-201ENST00000448848 438 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AC037198.2-201ENST00000478845 733 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AC069528.1-202ENST00000482888 637 ntBASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC39Q9UFE4 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC6.72□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms