Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SCN4AP35499 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
SCN4AP35499 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
SCN4AP35499 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.22□□□□□ -1.57
SCN4AP35499 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
SCN4AP35499 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC5.22□□□□□ -1.57
SCN4AP35499 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC5.22□□□□□ -1.57
SCN4AP35499 AL512326.1-201ENST00000443050 721 ntBASIC5.22□□□□□ -1.57
SCN4AP35499 RN7SL812P-201ENST00000493791 279 ntBASIC5.22□□□□□ -1.57
SCN4AP35499 PANCR-201ENST00000503456 493 ntTSL 5 BASIC5.22□□□□□ -1.57
SCN4AP35499 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC5.22□□□□□ -1.57
SCN4AP35499 AC079587.1-201ENST00000603846 277 ntBASIC5.22□□□□□ -1.57
SCN4AP35499 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
SCN4AP35499 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SCN4AP35499 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
SCN4AP35499 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
SCN4AP35499 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
SCN4AP35499 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SCN4AP35499 AL672167.1-204ENST00000641875 3017 ntBASIC5.21□□□□□ -1.57
SCN4AP35499 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.21□□□□□ -1.57
SCN4AP35499 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
SCN4AP35499 MIR200C-201ENST00000384980 68 ntBASIC5.21□□□□□ -1.58
SCN4AP35499 AC233289.1-201ENST00000403700 508 ntBASIC5.21□□□□□ -1.58
SCN4AP35499 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC5.21□□□□□ -1.58
SCN4AP35499 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC5.21□□□□□ -1.58
SCN4AP35499 CYCSP43-201ENST00000438233 310 ntBASIC5.21□□□□□ -1.58
SCN4AP35499 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.21□□□□□ -1.58
SCN4AP35499 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC5.21□□□□□ -1.58
SCN4AP35499 AC104651.2-201ENST00000447549 528 ntBASIC5.21□□□□□ -1.58
SCN4AP35499 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC5.21□□□□□ -1.58
SCN4AP35499 TRIM36-IT1-201ENST00000503723 881 ntBASIC5.21□□□□□ -1.58
SCN4AP35499 AC006499.5-201ENST00000505037 514 ntBASIC5.21□□□□□ -1.58
SCN4AP35499 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.21□□□□□ -1.58
SCN4AP35499 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC5.21□□□□□ -1.58
SCN4AP35499 AC110768.1-201ENST00000509222 400 ntBASIC5.21□□□□□ -1.58
SCN4AP35499 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC5.21□□□□□ -1.58
SCN4AP35499 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC5.21□□□□□ -1.58
SCN4AP35499 CYCSP40-201ENST00000575927 294 ntBASIC5.21□□□□□ -1.58
SCN4AP35499 VN1R92P-201ENST00000598511 928 ntBASIC5.21□□□□□ -1.58
SCN4AP35499 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC5.21□□□□□ -1.58
SCN4AP35499 SRGNP1-201ENST00000603392 451 ntBASIC5.21□□□□□ -1.58
SCN4AP35499 AC025175.1-201ENST00000606482 759 ntBASIC5.21□□□□□ -1.58
SCN4AP35499 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
SCN4AP35499 OR8G7P-201ENST00000616658 848 ntBASIC5.21□□□□□ -1.58
SCN4AP35499 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.21□□□□□ -1.58
SCN4AP35499 TEX41-300ENST00000631048 69 ntTSL 5 BASIC5.21□□□□□ -1.58
SCN4AP35499 AC099654.3-201ENST00000447087 1546 ntBASIC5.21□□□□□ -1.58
SCN4AP35499 AC022417.1-201ENST00000624768 1303 ntBASIC5.21□□□□□ -1.58
SCN4AP35499 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.21□□□□□ -1.58
SCN4AP35499 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
SCN4AP35499 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SCN4AP35499 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
SCN4AP35499 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC5.21□□□□□ -1.58
SCN4AP35499 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
SCN4AP35499 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
SCN4AP35499 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SCN4AP35499 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
SCN4AP35499 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SCN4AP35499 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SCN4AP35499 RNA5SP36-201ENST00000410197 133 ntBASIC5.2□□□□□ -1.58
SCN4AP35499 SETP9-201ENST00000423837 832 ntBASIC5.2□□□□□ -1.58
SCN4AP35499 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC5.2□□□□□ -1.58
SCN4AP35499 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.2□□□□□ -1.58
SCN4AP35499 NOTCH2P1-201ENST00000443481 624 ntBASIC5.2□□□□□ -1.58
SCN4AP35499 USP9YP2-201ENST00000504503 1000 ntBASIC5.2□□□□□ -1.58
SCN4AP35499 AK4P6-201ENST00000505168 528 ntBASIC5.2□□□□□ -1.58
SCN4AP35499 USP9YP1-201ENST00000513521 1002 ntBASIC5.2□□□□□ -1.58
SCN4AP35499 AC105031.1-201ENST00000518550 476 ntBASIC5.2□□□□□ -1.58
SCN4AP35499 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.2□□□□□ -1.58
SCN4AP35499 AC005868.1-201ENST00000536421 331 ntBASIC5.2□□□□□ -1.58
SCN4AP35499 AC120057.2-201ENST00000571520 271 ntBASIC5.2□□□□□ -1.58
SCN4AP35499 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC5.2□□□□□ -1.58
SCN4AP35499 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC5.2□□□□□ -1.58
SCN4AP35499 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.2□□□□□ -1.58
SCN4AP35499 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SCN4AP35499 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SCN4AP35499 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SCN4AP35499 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.2□□□□□ -1.58
SCN4AP35499 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.2□□□□□ -1.58
SCN4AP35499 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.2□□□□□ -1.58
SCN4AP35499 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SCN4AP35499 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SCN4AP35499 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SCN4AP35499 RPL21P43-201ENST00000425440 472 ntBASIC5.2□□□□□ -1.58
SCN4AP35499 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SCN4AP35499 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
SCN4AP35499 AC093014.1-201ENST00000548926 724 ntBASIC5.2□□□□□ -1.58
SCN4AP35499 TVP23BP1-201ENST00000557500 617 ntBASIC5.2□□□□□ -1.58
SCN4AP35499 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC5.2□□□□□ -1.58
SCN4AP35499 AC087499.8-201ENST00000578406 226 ntBASIC5.2□□□□□ -1.58
SCN4AP35499 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SCN4AP35499 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC5.2□□□□□ -1.58
SCN4AP35499 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SCN4AP35499 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SCN4AP35499 AC007546.1-201ENST00000619452 559 ntBASIC5.2□□□□□ -1.58
SCN4AP35499 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SCN4AP35499 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SCN4AP35499 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.19□□□□□ -1.58
SCN4AP35499 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
SCN4AP35499 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms