Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL159169.2-201ENST00000610061 1269 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 AC097505.1-201ENST00000610199 565 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 AC025594.3-201ENST00000613068 790 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 AC107075.1-201ENST00000613695 314 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 SNX18P12-201ENST00000624821 759 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 OR5H6-203ENST00000642105 978 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 MTND5P11-201ENST00000511037 1812 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 FGG-205ENST00000407946 1636 ntTSL 5 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 GNL2P1-201ENST00000451274 2190 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 RNU6-252P-201ENST00000363232 107 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 Y_RNA.162-201ENST00000363683 102 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 Y_RNA.256-201ENST00000364594 104 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 SNORD115-47-201ENST00000391226 86 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 GAS5-202ENST00000414075 413 ntTSL 2 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 BTF3P8-201ENST00000414577 526 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 BTF3L4P3-201ENST00000418879 476 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 C1DP1-201ENST00000426049 402 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AL160175.1-201ENST00000428124 247 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 RPSAP65-201ENST00000429660 595 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 RAB9AP5-201ENST00000437794 597 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 RAB9AP2-201ENST00000443911 597 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 TIMM8BP2-201ENST00000445940 251 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 ST13P20-201ENST00000447996 1065 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 MTND6P5-201ENST00000448266 512 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AC244505.3-201ENST00000454598 187 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 SNRPGP9-201ENST00000456025 225 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 NENFP3-201ENST00000503735 313 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AL359219.2-201ENST00000555184 348 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AC092332.1-201ENST00000563684 829 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 KC877982.1-201ENST00000602313 470 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 RMST_10.1-201ENST00000616309 154 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AC009159.1-201ENST00000618386 642 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AC019080.5-201ENST00000624891 757 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AC073488.3-201ENST00000631611 778 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AL137100.1-201ENST00000556703 1620 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 AL356317.1-201ENST00000396110 1436 ntBASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
CCDC39Q9UFE4 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 HSPD1P11-201ENST00000508643 1702 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 NACA3P-201ENST00000359690 648 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 SNORD56.4-201ENST00000363883 71 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 RNU6-1200P-201ENST00000384162 107 ntBASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
CCDC39Q9UFE4 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms