Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL772161.1-201ENST00000439130 476 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 AL357520.1-201ENST00000441557 453 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.72□□□□□ -1.49
USP39Q53GS9 AL671855.1-201ENST00000446875 1203 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 AP000936.2-201ENST00000447151 681 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.72□□□□□ -1.49
USP39Q53GS9 AC098583.1-201ENST00000480875 255 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 AC011825.1-201ENST00000484967 388 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 AC008953.1-201ENST00000497334 318 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC5.72□□□□□ -1.49
USP39Q53GS9 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC5.72□□□□□ -1.49
USP39Q53GS9 ST13P12-201ENST00000508958 1094 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC5.72□□□□□ -1.49
USP39Q53GS9 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC5.72□□□□□ -1.49
USP39Q53GS9 MIR2117-201ENST00000516780 80 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 RN7SKP99-201ENST00000517028 307 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 NPM1P52-201ENST00000518264 846 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC5.72□□□□□ -1.49
USP39Q53GS9 OR4R3P-201ENST00000525084 838 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC5.72□□□□□ -1.49
USP39Q53GS9 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC5.72□□□□□ -1.49
USP39Q53GS9 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC5.72□□□□□ -1.49
USP39Q53GS9 EIF4A2P5-201ENST00000529914 499 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC5.72□□□□□ -1.49
USP39Q53GS9 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC5.72□□□□□ -1.49
USP39Q53GS9 AL512347.1-201ENST00000566420 503 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 AC002400.1-201ENST00000569310 726 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
USP39Q53GS9 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC5.72□□□□□ -1.49
USP39Q53GS9 AP002884.5-201ENST00000595053 1132 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 AC006115.2-201ENST00000596823 202 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 DUXAP11-201ENST00000603858 526 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 LARP7P1-201ENST00000605576 316 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 AF250324.2-201ENST00000608299 610 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC5.72□□□□□ -1.49
USP39Q53GS9 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP39Q53GS9 ZNF90P1-201ENST00000480493 1951 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.72□□□□□ -1.49
USP39Q53GS9 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
USP39Q53GS9 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP39Q53GS9 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP39Q53GS9 AL359715.3-201ENST00000569267 2123 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP39Q53GS9 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
USP39Q53GS9 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
USP39Q53GS9 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP39Q53GS9 AC087516.1-201ENST00000561236 2428 ntBASIC5.72□□□□□ -1.49
USP39Q53GS9 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.72□□□□□ -1.49
USP39Q53GS9 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
USP39Q53GS9 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.49
USP39Q53GS9 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC5.71□□□□□ -1.49
USP39Q53GS9 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
USP39Q53GS9 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.71□□□□□ -1.5
USP39Q53GS9 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
USP39Q53GS9 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
USP39Q53GS9 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 AC007938.2-201ENST00000604666 2634 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
USP39Q53GS9 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
USP39Q53GS9 AC026523.2-201ENST00000625039 7739 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
USP39Q53GS9 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
USP39Q53GS9 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.71□□□□□ -1.5
USP39Q53GS9 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
USP39Q53GS9 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
USP39Q53GS9 RNA5SP234-201ENST00000363916 119 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 Y_RNA.517-201ENST00000384551 106 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 MOB4-205ENST00000409916 829 ntTSL 3 BASIC5.71□□□□□ -1.5
USP39Q53GS9 RN7SKP125-201ENST00000410481 302 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC5.71□□□□□ -1.5
USP39Q53GS9 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC5.71□□□□□ -1.5
USP39Q53GS9 MTCO2P19-201ENST00000427513 598 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC5.71□□□□□ -1.5
USP39Q53GS9 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC5.71□□□□□ -1.5
USP39Q53GS9 Z74696.2-201ENST00000436514 498 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.71□□□□□ -1.5
USP39Q53GS9 AC072052.1-201ENST00000496556 306 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.71□□□□□ -1.5
USP39Q53GS9 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC5.71□□□□□ -1.5
USP39Q53GS9 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.71□□□□□ -1.5
USP39Q53GS9 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC5.71□□□□□ -1.5
USP39Q53GS9 AC078899.1-201ENST00000521432 1185 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC5.71□□□□□ -1.5
USP39Q53GS9 AP000859.1-201ENST00000525536 307 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.71□□□□□ -1.5
USP39Q53GS9 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.71□□□□□ -1.5
USP39Q53GS9 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.71□□□□□ -1.5
USP39Q53GS9 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC5.71□□□□□ -1.5
USP39Q53GS9 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC5.71□□□□□ -1.5
USP39Q53GS9 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC5.71□□□□□ -1.5
USP39Q53GS9 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC5.71□□□□□ -1.5
USP39Q53GS9 MTCO3P24-201ENST00000572729 782 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC5.71□□□□□ -1.5
USP39Q53GS9 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.71□□□□□ -1.5
USP39Q53GS9 RN7SL622P-201ENST00000585292 275 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC5.71□□□□□ -1.5
USP39Q53GS9 AL356055.1-201ENST00000602528 446 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 AC024940.4-201ENST00000605507 246 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 AC124312.6-202ENST00000623624 418 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 AL356596.1-201ENST00000624230 379 ntBASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms