Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC025946.2-201ENST00000603398 234 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC3.31□□□□□ -1.88
FOXA3P55318 HMGB1P50-201ENST00000605814 607 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 AC093799.2-201ENST00000610062 578 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 AC138907.10-201ENST00000623708 983 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
FOXA3P55318 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC3.31□□□□□ -1.88
FOXA3P55318 AC010329.2-201ENST00000595195 2737 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.31□□□□□ -1.88
FOXA3P55318 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
FOXA3P55318 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC3.31□□□□□ -1.88
FOXA3P55318 CPHL1P-201ENST00000461341 3407 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC3.31□□□□□ -1.88
FOXA3P55318 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
FOXA3P55318 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
FOXA3P55318 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.3□□□□□ -1.88
FOXA3P55318 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC3.3□□□□□ -1.88
FOXA3P55318 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC3.3□□□□□ -1.88
FOXA3P55318 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
FOXA3P55318 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.3□□□□□ -1.88
FOXA3P55318 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.3□□□□□ -1.88
FOXA3P55318 AP000756.2-201ENST00000624168 2567 ntBASIC3.3□□□□□ -1.88
FOXA3P55318 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC3.3□□□□□ -1.88
FOXA3P55318 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
FOXA3P55318 AC017007.4-201ENST00000503353 1352 ntBASIC3.3□□□□□ -1.88
FOXA3P55318 AC010132.2-201ENST00000295493 1043 ntBASIC3.3□□□□□ -1.88
FOXA3P55318 FIG4-202ENST00000368941 791 ntTSL 3 BASIC3.3□□□□□ -1.88
FOXA3P55318 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
FOXA3P55318 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC3.3□□□□□ -1.88
FOXA3P55318 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC3.3□□□□□ -1.88
FOXA3P55318 RPL24P2-201ENST00000421023 475 ntBASIC3.3□□□□□ -1.88
FOXA3P55318 AC234779.1-201ENST00000425910 285 ntBASIC3.3□□□□□ -1.88
FOXA3P55318 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC3.3□□□□□ -1.88
FOXA3P55318 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3.3□□□□□ -1.88
FOXA3P55318 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.3□□□□□ -1.88
FOXA3P55318 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC3.3□□□□□ -1.88
FOXA3P55318 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC3.3□□□□□ -1.88
FOXA3P55318 FAR2P1-206ENST00000449736 709 ntBASIC3.3□□□□□ -1.88
FOXA3P55318 PPIA-203ENST00000451562 544 ntTSL 2 BASIC3.3□□□□□ -1.88
FOXA3P55318 HMGB3P22-202ENST00000451823 572 ntBASIC3.3□□□□□ -1.88
FOXA3P55318 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC3.3□□□□□ -1.88
FOXA3P55318 AC023141.9-201ENST00000458734 412 ntBASIC3.3□□□□□ -1.88
FOXA3P55318 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC3.3□□□□□ -1.88
FOXA3P55318 RN7SL717P-201ENST00000478343 297 ntBASIC3.3□□□□□ -1.88
FOXA3P55318 PPIAP19-201ENST00000486414 492 ntBASIC3.3□□□□□ -1.88
FOXA3P55318 RPL36AP41-201ENST00000493820 306 ntBASIC3.3□□□□□ -1.88
FOXA3P55318 AC072052.1-201ENST00000496556 306 ntBASIC3.3□□□□□ -1.88
FOXA3P55318 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC3.3□□□□□ -1.88
FOXA3P55318 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC3.3□□□□□ -1.88
FOXA3P55318 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.3□□□□□ -1.88
FOXA3P55318 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
FOXA3P55318 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC3.3□□□□□ -1.88
FOXA3P55318 IGLVIV-53-201ENST00000520107 367 ntBASIC3.3□□□□□ -1.88
FOXA3P55318 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.3□□□□□ -1.88
FOXA3P55318 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC3.3□□□□□ -1.88
FOXA3P55318 AC105129.1-201ENST00000560250 297 ntBASIC3.3□□□□□ -1.88
FOXA3P55318 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC3.3□□□□□ -1.88
FOXA3P55318 AC005034.4-201ENST00000603612 899 ntBASIC3.3□□□□□ -1.88
FOXA3P55318 IGKV1OR2-9-201ENST00000603957 287 ntBASIC3.3□□□□□ -1.88
FOXA3P55318 IGKV1OR2-11-201ENST00000604120 287 ntBASIC3.3□□□□□ -1.88
FOXA3P55318 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC3.3□□□□□ -1.88
FOXA3P55318 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC3.3□□□□□ -1.88
FOXA3P55318 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC3.3□□□□□ -1.88
FOXA3P55318 AL645927.2-201ENST00000618350 349 ntBASIC3.3□□□□□ -1.88
FOXA3P55318 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC3.3□□□□□ -1.88
FOXA3P55318 TEX41-256ENST00000626411 368 ntTSL 5 BASIC3.3□□□□□ -1.88
FOXA3P55318 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC3.3□□□□□ -1.88
FOXA3P55318 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
FOXA3P55318 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
FOXA3P55318 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC3.3□□□□□ -1.88
FOXA3P55318 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
FOXA3P55318 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC3.3□□□□□ -1.88
FOXA3P55318 AC009951.1-201ENST00000623674 2614 ntBASIC3.3□□□□□ -1.88
FOXA3P55318 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
FOXA3P55318 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.3□□□□□ -1.88
FOXA3P55318 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
FOXA3P55318 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
FOXA3P55318 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
FOXA3P55318 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.29□□□□□ -1.88
FOXA3P55318 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
FOXA3P55318 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
FOXA3P55318 AC103591.2-201ENST00000265259 766 ntBASIC3.29□□□□□ -1.88
FOXA3P55318 RNA5SP242-201ENST00000364171 118 ntBASIC3.29□□□□□ -1.88
FOXA3P55318 RNA5SP178-201ENST00000410380 128 ntBASIC3.29□□□□□ -1.88
FOXA3P55318 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.29□□□□□ -1.88
FOXA3P55318 AC140479.3-201ENST00000418944 1126 ntBASIC3.29□□□□□ -1.88
FOXA3P55318 CYP4F29P-201ENST00000420685 446 ntBASIC3.29□□□□□ -1.88
FOXA3P55318 RPEP2-201ENST00000432149 701 ntBASIC3.29□□□□□ -1.88
FOXA3P55318 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.29□□□□□ -1.88
FOXA3P55318 AC012671.1-201ENST00000451912 203 ntBASIC3.29□□□□□ -1.88
FOXA3P55318 AL645939.1-201ENST00000453429 797 ntBASIC3.29□□□□□ -1.88
FOXA3P55318 RPL23AP71-201ENST00000470966 469 ntBASIC3.29□□□□□ -1.88
FOXA3P55318 AC146944.2-203ENST00000502493 354 ntBASIC3.29□□□□□ -1.88
FOXA3P55318 AC139495.1-202ENST00000513164 354 ntBASIC3.29□□□□□ -1.88
FOXA3P55318 AC004980.4-201ENST00000513375 203 ntBASIC3.29□□□□□ -1.88
FOXA3P55318 MTATP6P1-201ENST00000514057 681 ntBASIC3.29□□□□□ -1.88
FOXA3P55318 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXA3P55318 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXA3P55318 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXA3P55318 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms