Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC5.56□□□□□ -1.52
COL18A1P39060 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC5.56□□□□□ -1.52
COL18A1P39060 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC5.56□□□□□ -1.52
COL18A1P39060 AC090312.1-201ENST00000580637 348 ntBASIC5.56□□□□□ -1.52
COL18A1P39060 HMGB2P1-201ENST00000591146 634 ntBASIC5.56□□□□□ -1.52
COL18A1P39060 AC112230.1-201ENST00000604342 547 ntBASIC5.56□□□□□ -1.52
COL18A1P39060 AC090912.3-201ENST00000609775 533 ntBASIC5.56□□□□□ -1.52
COL18A1P39060 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.56□□□□□ -1.52
COL18A1P39060 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.56□□□□□ -1.52
COL18A1P39060 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL18A1P39060 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
COL18A1P39060 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.56□□□□□ -1.52
COL18A1P39060 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL18A1P39060 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL18A1P39060 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL18A1P39060 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
COL18A1P39060 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL18A1P39060 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC5.55□□□□□ -1.52
COL18A1P39060 AL139039.2-201ENST00000407436 479 ntBASIC5.55□□□□□ -1.52
COL18A1P39060 MIR1911-201ENST00000410783 80 ntBASIC5.55□□□□□ -1.52
COL18A1P39060 RAB9AP3-201ENST00000412737 573 ntBASIC5.55□□□□□ -1.52
COL18A1P39060 AC006011.1-201ENST00000442758 349 ntBASIC5.55□□□□□ -1.52
COL18A1P39060 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.55□□□□□ -1.52
COL18A1P39060 RAB9AP1-201ENST00000449393 573 ntBASIC5.55□□□□□ -1.52
COL18A1P39060 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.55□□□□□ -1.52
COL18A1P39060 AC090013.1-201ENST00000485147 480 ntBASIC5.55□□□□□ -1.52
COL18A1P39060 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.55□□□□□ -1.52
COL18A1P39060 AC110743.1-201ENST00000584870 478 ntBASIC5.55□□□□□ -1.52
COL18A1P39060 AC009234.1-201ENST00000634985 895 ntTSL 5 BASIC5.55□□□□□ -1.52
COL18A1P39060 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.55□□□□□ -1.52
COL18A1P39060 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.55□□□□□ -1.52
COL18A1P39060 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC5.55□□□□□ -1.52
COL18A1P39060 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL18A1P39060 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL18A1P39060 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL18A1P39060 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL18A1P39060 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL18A1P39060 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL18A1P39060 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL18A1P39060 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.55□□□□□ -1.52
COL18A1P39060 ACEA_U3.1-201ENST00000363057 217 ntBASIC5.55□□□□□ -1.52
COL18A1P39060 CRYBB2P1-203ENST00000415709 538 ntBASIC5.55□□□□□ -1.52
COL18A1P39060 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.55□□□□□ -1.52
COL18A1P39060 OR5BE1P-201ENST00000425977 939 ntBASIC5.55□□□□□ -1.52
COL18A1P39060 AC091286.1-201ENST00000431233 461 ntBASIC5.55□□□□□ -1.52
COL18A1P39060 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.55□□□□□ -1.52
COL18A1P39060 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC5.55□□□□□ -1.52
COL18A1P39060 AC093591.2-201ENST00000565254 3843 ntBASIC5.55□□□□□ -1.52
COL18A1P39060 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.55□□□□□ -1.52
COL18A1P39060 SNORA51-201ENST00000606420 132 ntBASIC5.55□□□□□ -1.52
COL18A1P39060 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC5.55□□□□□ -1.52
COL18A1P39060 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC5.55□□□□□ -1.52
COL18A1P39060 OR5BE1P-202ENST00000641168 1176 ntBASIC5.55□□□□□ -1.52
COL18A1P39060 SUPT16HP1-201ENST00000537175 3133 ntBASIC5.54□□□□□ -1.52
COL18A1P39060 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL18A1P39060 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL18A1P39060 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL18A1P39060 PLEKHG1-201ENST00000358517 7138 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
COL18A1P39060 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL18A1P39060 LYST-202ENST00000389794 12985 ntTSL 5 BASIC5.54□□□□□ -1.52
COL18A1P39060 AC016588.2-201ENST00000632484 3021 ntBASIC5.54□□□□□ -1.52
COL18A1P39060 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL18A1P39060 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL18A1P39060 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
COL18A1P39060 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
COL18A1P39060 TCEA1P4-201ENST00000415066 844 ntBASIC5.54□□□□□ -1.52
COL18A1P39060 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC5.54□□□□□ -1.52
COL18A1P39060 AL358472.1-201ENST00000431295 329 ntBASIC5.54□□□□□ -1.52
COL18A1P39060 AL050321.1-201ENST00000432363 400 ntBASIC5.54□□□□□ -1.52
COL18A1P39060 ABCF2P2-201ENST00000450549 296 ntBASIC5.54□□□□□ -1.52
COL18A1P39060 AC108751.2-201ENST00000469993 231 ntBASIC5.54□□□□□ -1.52
COL18A1P39060 RPS4XP15-201ENST00000489210 795 ntBASIC5.54□□□□□ -1.52
COL18A1P39060 HMGB3P16-201ENST00000508037 287 ntBASIC5.54□□□□□ -1.52
COL18A1P39060 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC5.54□□□□□ -1.52
COL18A1P39060 KRT19P6-201ENST00000510983 209 ntBASIC5.54□□□□□ -1.52
COL18A1P39060 AL352979.3-201ENST00000553515 247 ntBASIC5.54□□□□□ -1.52
COL18A1P39060 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC5.54□□□□□ -1.52
COL18A1P39060 RN7SL435P-201ENST00000584418 282 ntBASIC5.54□□□□□ -1.52
COL18A1P39060 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC5.54□□□□□ -1.52
COL18A1P39060 AC114878.2-201ENST00000604863 1251 ntBASIC5.54□□□□□ -1.52
COL18A1P39060 AC091953.5-201ENST00000622919 233 ntBASIC5.54□□□□□ -1.52
COL18A1P39060 AC091905.2-201ENST00000623143 306 ntBASIC5.54□□□□□ -1.52
COL18A1P39060 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.54□□□□□ -1.52
COL18A1P39060 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL18A1P39060 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL18A1P39060 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
COL18A1P39060 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
COL18A1P39060 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL18A1P39060 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL18A1P39060 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL18A1P39060 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC5.53□□□□□ -1.52
COL18A1P39060 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL18A1P39060 EIF4EBP2P3-201ENST00000403144 334 ntBASIC5.53□□□□□ -1.52
COL18A1P39060 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC5.53□□□□□ -1.52
COL18A1P39060 RPL38P1-201ENST00000460914 211 ntBASIC5.53□□□□□ -1.52
COL18A1P39060 RPS4XP18-201ENST00000495480 763 ntBASIC5.53□□□□□ -1.52
COL18A1P39060 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC5.53□□□□□ -1.52
COL18A1P39060 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC5.53□□□□□ -1.52
COL18A1P39060 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.53□□□□□ -1.52
COL18A1P39060 MIR5684-201ENST00000585074 65 ntBASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms