Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 AC242843.1-201ENST00000618702 573 ntBASIC5.21□□□□□ -1.58
SNX9Q9Y5X1 CR381572.2-201ENST00000624852 397 ntBASIC5.21□□□□□ -1.58
SNX9Q9Y5X1 AP003485.1-201ENST00000625093 753 ntBASIC5.21□□□□□ -1.58
SNX9Q9Y5X1 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.21□□□□□ -1.58
SNX9Q9Y5X1 SMG1P4-204ENST00000523028 4131 ntBASIC5.21□□□□□ -1.58
SNX9Q9Y5X1 AC009643.2-201ENST00000603543 1448 ntBASIC5.21□□□□□ -1.58
SNX9Q9Y5X1 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
SNX9Q9Y5X1 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
SNX9Q9Y5X1 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.21□□□□□ -1.58
SNX9Q9Y5X1 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 RNA5SP87-201ENST00000384155 118 ntBASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 MIR585-201ENST00000384887 94 ntBASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 AC007738.1-201ENST00000413892 348 ntBASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 VN1R37P-201ENST00000419096 748 ntBASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 OR2B7P-201ENST00000429302 934 ntBASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 RPL35AP21-201ENST00000437667 333 ntBASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 AL356981.1-201ENST00000454879 684 ntBASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 RN7SL517P-201ENST00000462240 305 ntBASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 CREM-220ENST00000463314 964 ntTSL 2 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 STRADBP1-201ENST00000478954 1281 ntBASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 IGLV2-34-201ENST00000490007 283 ntBASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 HMGB1P47-201ENST00000511281 589 ntBASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 RNU6-319P-201ENST00000516025 108 ntBASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 AP001880.2-201ENST00000538233 448 ntBASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 UBE2FP2-201ENST00000566646 462 ntBASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 SNORA74C-1-201ENST00000580726 201 ntBASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 AC124856.1-201ENST00000600819 896 ntBASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 AC012213.4-201ENST00000606457 354 ntBASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.2□□□□□ -1.58
SNX9Q9Y5X1 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 SDAD1P1-202ENST00000524156 2051 ntBASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 AL731532.2-201ENST00000623542 1953 ntBASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 U3.30-201ENST00000391308 210 ntBASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 RPL10P10-201ENST00000403509 664 ntBASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 AL359643.1-201ENST00000404109 423 ntBASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 Z86062.1-201ENST00000406773 777 ntBASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 AC114755.2-201ENST00000413520 361 ntBASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 AC092570.3-201ENST00000420113 693 ntBASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 ARL2BPP3-201ENST00000421226 480 ntBASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 AC022431.1-201ENST00000450941 438 ntBASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 RN7SL205P-201ENST00000490174 284 ntBASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 MTCO1P31-201ENST00000506355 492 ntBASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 Y_RNA.719-201ENST00000517156 106 ntBASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 RPL23AP53-201ENST00000521854 457 ntBASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 AC022726.1-201ENST00000587475 207 ntBASIC5.19□□□□□ -1.58
SNX9Q9Y5X1 AL512782.1-201ENST00000603093 364 ntBASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms