Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC010374.1-201ENST00000503762 1237 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AC010627.1-201ENST00000503819 1294 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 HPRT1P1-201ENST00000509498 657 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 TPT1P8-201ENST00000510120 555 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 SCARNA20.4-201ENST00000516969 131 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 IGKV2D-10-201ENST00000520194 281 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 MTND1P6-201ENST00000523621 946 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 IGLV3-30-201ENST00000524362 298 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AC027369.5-201ENST00000533838 755 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AP000916.1-201ENST00000533869 835 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 DCN-210ENST00000547568 823 ntTSL 3 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AC106730.2-201ENST00000566641 540 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AC023825.1-201ENST00000566704 1030 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 RBM22P12-201ENST00000567098 1255 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AC127024.5-201ENST00000580085 462 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 EIF1P5-201ENST00000585002 234 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 CDC42EP3P1-201ENST00000601004 764 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AC091932.2-201ENST00000623014 291 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AP002799.1-201ENST00000623552 423 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AP003497.2-201ENST00000624220 967 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AC004808.1-201ENST00000627671 721 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 BMS1P21-201ENST00000634565 365 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 TMEM161BP1-201ENST00000457388 1457 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 HSPA8P18-201ENST00000439846 1928 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 MIR320B1-201ENST00000390209 79 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 RPL22P22-201ENST00000395439 379 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 RNU4-74P-201ENST00000411280 161 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AC105402.1-201ENST00000413336 545 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 EEF1A1P29-201ENST00000416082 1096 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AC023128.2-201ENST00000420880 1223 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 RPL12P28-201ENST00000430852 489 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AL645638.1-201ENST00000440519 361 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 HMGB1P26-201ENST00000452520 628 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 RANP1-206ENST00000455094 651 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 RN7SL423P-201ENST00000486202 304 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AC108120.2-201ENST00000512973 294 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 EIF3KP3-201ENST00000514461 639 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 NRBF2P4-201ENST00000520874 850 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 SMARCE1P4-201ENST00000523647 241 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 PCNPP1-201ENST00000552501 511 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 YWHAZP1-201ENST00000556286 722 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 MIR3934-201ENST00000579806 107 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AC108738.1-201ENST00000603703 237 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AC016597.2-201ENST00000613256 341 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AC025574.2-201ENST00000615621 514 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AL034549.2-201ENST00000618285 3373 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AL669942.2-201ENST00000620352 697 ntBASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
PDLIM3Q53GG5 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms