Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AL035461.2-201ENST00000619201 524 ntBASIC3.33□□□□□ -1.88
FOXA3P55318 TEX41-254ENST00000626394 423 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXA3P55318 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC3.33□□□□□ -1.88
FOXA3P55318 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
FOXA3P55318 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
FOXA3P55318 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
FOXA3P55318 LINC00622-201ENST00000562811 1570 ntBASIC3.33□□□□□ -1.88
FOXA3P55318 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
FOXA3P55318 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
FOXA3P55318 ARHGAP42P1-201ENST00000507474 1976 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 AC018555.1-201ENST00000567548 1980 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.32□□□□□ -1.88
FOXA3P55318 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
FOXA3P55318 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
FOXA3P55318 AC107977.1-201ENST00000355745 939 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC3.32□□□□□ -1.88
FOXA3P55318 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
FOXA3P55318 MIR3074-201ENST00000384885 81 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 AL031985.1-201ENST00000392713 418 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 U3.36-201ENST00000408418 213 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 AC099535.1-201ENST00000408928 371 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC3.32□□□□□ -1.88
FOXA3P55318 AL513325.1-201ENST00000417716 1034 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 AC092647.1-201ENST00000420654 287 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 DPY19L1P2-201ENST00000426647 915 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 CYCSP11-201ENST00000436426 315 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC3.32□□□□□ -1.88
FOXA3P55318 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC3.32□□□□□ -1.88
FOXA3P55318 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC3.32□□□□□ -1.88
FOXA3P55318 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC3.32□□□□□ -1.88
FOXA3P55318 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.32□□□□□ -1.88
FOXA3P55318 AURKAPS2-201ENST00000454983 333 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 RPS18P6-201ENST00000476880 458 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 S100A11P1-201ENST00000477525 312 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 AC108693.1-201ENST00000496068 432 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC3.32□□□□□ -1.88
FOXA3P55318 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC3.32□□□□□ -1.88
FOXA3P55318 AP001804.2-201ENST00000533932 910 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC3.32□□□□□ -1.88
FOXA3P55318 AL360157.1-201ENST00000565962 87 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 AC020978.7-201ENST00000575953 1187 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.32□□□□□ -1.88
FOXA3P55318 AL160290.3-201ENST00000604869 165 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC3.32□□□□□ -1.88
FOXA3P55318 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC3.32□□□□□ -1.88
FOXA3P55318 ZNRD1ASP-221ENST00000637794 1074 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
FOXA3P55318 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
FOXA3P55318 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.32□□□□□ -1.88
FOXA3P55318 AL592437.2-201ENST00000421655 2434 ntBASIC3.32□□□□□ -1.88
FOXA3P55318 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
FOXA3P55318 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC3.32□□□□□ -1.88
FOXA3P55318 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.32□□□□□ -1.88
FOXA3P55318 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
FOXA3P55318 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
FOXA3P55318 AL445437.1-201ENST00000623157 3087 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
FOXA3P55318 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.31□□□□□ -1.88
FOXA3P55318 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.31□□□□□ -1.88
FOXA3P55318 AC008725.1-201ENST00000605123 2263 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
FOXA3P55318 BX005019.1-201ENST00000561881 1810 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
FOXA3P55318 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.31□□□□□ -1.88
FOXA3P55318 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC3.31□□□□□ -1.88
FOXA3P55318 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
FOXA3P55318 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
FOXA3P55318 RN7SKP44-201ENST00000363602 316 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 RN7SKP269-201ENST00000365545 319 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
FOXA3P55318 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
FOXA3P55318 ZNF603P-201ENST00000405613 487 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 RNA5SP306-201ENST00000411087 107 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.31□□□□□ -1.88
FOXA3P55318 AC097523.2-201ENST00000435551 652 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 NPM1P48-201ENST00000436002 853 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 AC090114.3-201ENST00000479267 829 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
FOXA3P55318 AC140172.1-201ENST00000502928 141 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 SCARNA22-201ENST00000503991 125 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 GAPDHP56-201ENST00000506031 988 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC3.31□□□□□ -1.88
FOXA3P55318 RNA5SP362-201ENST00000516048 118 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 RN7SKP70-201ENST00000516655 271 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC3.31□□□□□ -1.88
FOXA3P55318 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC3.31□□□□□ -1.88
FOXA3P55318 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC3.31□□□□□ -1.88
FOXA3P55318 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC3.31□□□□□ -1.88
FOXA3P55318 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC3.31□□□□□ -1.88
FOXA3P55318 RGS5-219ENST00000528019 512 ntTSL 4 BASIC3.31□□□□□ -1.88
FOXA3P55318 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.31□□□□□ -1.88
FOXA3P55318 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.31□□□□□ -1.88
FOXA3P55318 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC3.31□□□□□ -1.88
FOXA3P55318 AL352979.3-201ENST00000553515 247 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.31□□□□□ -1.88
FOXA3P55318 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC3.31□□□□□ -1.88
FOXA3P55318 RN7SL652P-201ENST00000577769 300 ntBASIC3.31□□□□□ -1.88
FOXA3P55318 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC3.31□□□□□ -1.88
FOXA3P55318 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC3.31□□□□□ -1.88
FOXA3P55318 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms