Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AC068790.7-201ENST00000602347 528 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AC121247.2-201ENST00000604776 136 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 LSM1P2-201ENST00000604911 322 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AL158042.1-201ENST00000605338 460 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AL392048.1-201ENST00000613946 534 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AL603755.1-201ENST00000619504 163 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AP005432.1-201ENST00000580891 3485 ntBASIC5.64□□□□□ -1.51
TDP1Q9NUW8 AC026523.2-201ENST00000625039 7739 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 DUTP5-201ENST00000406790 469 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 RNA5SP487-201ENST00000410186 122 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 RPSAP35-201ENST00000413753 818 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 USP9YP26-201ENST00000421008 661 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 RPL7P53-201ENST00000421245 739 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 RIMKLBP2-201ENST00000424737 654 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 RPL21P43-201ENST00000425440 472 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC092651.1-201ENST00000426110 312 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC092393.1-201ENST00000439625 742 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 MRPL42P4-201ENST00000453267 443 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 RPL7P6-201ENST00000480903 738 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC091544.1-201ENST00000484702 348 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 IGKV2D-10-201ENST00000520194 281 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AP006245.2-201ENST00000522004 300 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC122688.1-201ENST00000541494 223 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC010198.2-201ENST00000550612 259 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 POLR2KP1-201ENST00000553226 168 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 NBEAP1-201ENST00000554452 979 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 NPM1P42-201ENST00000560329 862 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 NIFKP8-201ENST00000560500 874 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC005341.1-201ENST00000571086 708 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 EIF1P6-201ENST00000600054 334 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC087763.1-201ENST00000603391 286 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC080013.3-201ENST00000606839 578 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC099676.1-201ENST00000608886 657 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC105227.2-201ENST00000615075 605 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 AC087821.2-201ENST00000637086 450 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 OR55B1P-203ENST00000641518 2602 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TDP1Q9NUW8 TTC39DP-201ENST00000416781 1688 ntBASIC5.63□□□□□ -1.51
TDP1Q9NUW8 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 RNU6-707P-201ENST00000364647 95 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 Y_RNA.465-201ENST00000384293 102 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 RNU6-575P-201ENST00000411326 105 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TDP1Q9NUW8 MORF4L1P6-201ENST00000418771 268 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 OR10T1P-201ENST00000424327 947 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 AP001324.1-201ENST00000428553 399 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 AC022022.1-201ENST00000430304 178 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 MTND1P32-201ENST00000433043 938 ntBASIC5.62□□□□□ -1.51
TDP1Q9NUW8 UBE2D3P1-201ENST00000436669 444 ntBASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms