Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 ZNF652P1-201ENST00000442420 1309 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 RNU6-31P-201ENST00000384388 108 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 RNA5SP332-201ENST00000391063 115 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 LRRC37BP1-201ENST00000398851 714 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 COX5BP7-201ENST00000414780 274 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 BX510359.2-201ENST00000417920 305 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 AC091390.1-201ENST00000433904 331 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 AL359265.2-201ENST00000434367 631 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 AC093716.1-201ENST00000435923 377 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 AL353898.1-201ENST00000444055 238 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 HMGB1P4-201ENST00000455362 567 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 RPL23AP56-201ENST00000460778 453 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 AC010326.1-201ENST00000462726 602 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 IGHV3-63-201ENST00000518422 341 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 NOP56P3-201ENST00000549457 385 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 AL512310.9-201ENST00000553311 948 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 AC127024.5-201ENST00000580085 462 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 ZNF92P2-201ENST00000600543 1059 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 AC068790.7-201ENST00000602347 528 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 AL606537.1-201ENST00000607258 2011 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 AC097460.3-201ENST00000623099 442 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 OR5AC4P-202ENST00000642086 985 ntBASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC3Q9BQI4 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 ZNF90P1-201ENST00000480493 1951 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 SNORA73.1-201ENST00000363107 205 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 SNORA62-201ENST00000365493 153 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 AC104297.1-201ENST00000393779 870 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 U3.32-201ENST00000408116 212 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 OR6C64P-201ENST00000419708 825 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 OR2B7P-201ENST00000429302 934 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 AC005154.2-201ENST00000438110 379 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 TPT1P12-201ENST00000448968 492 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 AL691482.1-201ENST00000453255 87 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 MTND2P6-201ENST00000455337 1030 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 RPL5P13-201ENST00000462840 709 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 FTH1P2-201ENST00000466086 412 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 ENPP7P9-201ENST00000514456 627 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 RNA5SP230-201ENST00000517039 122 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 AC104687.2-201ENST00000604442 342 ntBASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms